Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13490 582 / 0 AAC2 ADP/ATP carrier 2 (.1.2) AT3G08580 573 / 0 AAC1 ADP/ATP carrier 1 (.1.2) AT4G28390 527 / 0 ATAAC3, AAC3 ADP/ATP carrier 3 (.1) AT5G17400 343 / 2e-117 ER-ANT1 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) AT5G56450 192 / 4e-58 PM-ANT Mitochondrial substrate carrier family protein (.1) AT3G55640 112 / 4e-28 Mitochondrial substrate carrier family protein (.1) AT4G26180 112 / 6e-28 Mitochondrial substrate carrier family protein (.1) AT2G37890 111 / 1e-27 Mitochondrial substrate carrier family protein (.1) AT3G53940 105 / 3e-25 Mitochondrial substrate carrier family protein (.1) AT1G14560 104 / 3e-25 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G019400 [exp] 686 / 0 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.001G267800 [exp] 611 / 0 AT3G08580 592 / 0.0 ADP/ATP carrier 1 (.1.2) Potri.009G062200 [exp] 603 / 0 AT5G13490 625 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.007G139100 [exp] 534 / 0 AT4G28390 572 / 0.0 ADP/ATP carrier 3 (.1) Potri.017G012800 [exp] 533 / 0 AT4G28390 575 / 0.0 ADP/ATP carrier 3 (.1) Potri.012G062500 [exp] 316 / 2e-106 AT5G17400 416 / 5e-147 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Potri.006G227100 [exp] 194 / 4e-59 AT5G56450 462 / 4e-165 Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 115 / 5e-29 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G226300 [exp] 110 / 3e-27 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019702 [exp] 587 / 0 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016418 [exp] 586 / 0 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10019701 [exp] 582 / 0 AT5G13490 607 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016417 [exp] 578 / 0 AT5G13490 602 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031843 [exp] 562 / 0 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031276 [exp] 555 / 0 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10039847 [exp] 507 / 0 AT4G28390 545 / 0.0 ADP/ATP carrier 3 (.1) Lus10034658 [exp] 327 / 1e-110 AT5G17400 491 / 5e-177 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10017874 [exp] 316 / 1e-106 AT5G17400 473 / 5e-170 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10018612 [exp] 283 / 4e-95 AT5G13490 301 / 1e-102 ADP/ATP carrier 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.003G204600.1 pacid=42785340 polypeptide=Potri.003G204600.1.p locus=Potri.003G204600 ID=Potri.003G204600.1.v4.1 annot-version=v4.1 ATGGCTGATAGGCGCCAGCAACCGTCTGTCATGCAAAAGATGGCCAGCCAGGTCCATCTCAGTTCTAGCTTTCCCCAAGGTTTTCAGAGACCTGCTTTAC ACCGAAGGCAGTTTGCATATGGAAACTATTCCAATGCGGGATTCCAGTATGCCATGACAAGGCCATGCCAGTCTAGCCCTGACATGTCATTGGTTGCATC ATCTACTGCACCGGTATTTGTCCAAGCCCCGTCTGAGAAAGGCTTGGCTGGCTTTGCTGTTGATTTTCTTATGGGCGGTGTTTCTGCTGCCGTGTCAAAA ACTGCTGCAGCTCCCATTGAGCGTGTGAAGCTCTTGATCCAAAACCAAGATGAGATGATCAAGGCTGGTCGACTCTCTGAACCATACAAGGGAATTGGAG AATGTTTCAGCCGAACAATAAAAGATGAGGGGACGATGTCTTTGTGGAGAGGGAACACTGCTAATGTCATCCGTTACTTCCCCACTCAGGCCCTGAATTT TGCATTCAAAGATTACTTTAAGAGGCTTTTCAACTTCAAGAAGGACCGTGATGGCTATTGGAAGTGGTTCGCTGGAAACTTGGCATCTGGTGGTGCTGCT GGTGGCTCGTCACTACTCTTTGTTTATTCTTTGGATTATGCCCGAACACGTCTTGCAAATGATGCCAAGGCTGGAAAAAAGGGAGGGGAGAGGCAGTTCA ATGGTTTGGTTGATGTCTACAGGAAGACACTAAAATCAGATGGCATTGCTGGGATTTATCGTGGATTTAACATTTCATGTGTTGGTATTATTGTGTACCG TGGTCTGTATTTTGGATTGTATGATTCTTTGAAGCCAGTCGTCCTGACTGGAAAGCTGCAGGATAGTTTCTTTGCTAGCTTTGCTCTTGGCTGGGTCATC ACCAATGGTGCTAGTCTTGCATCCTATCCAATTGACACTGTCCGCAGAAGAATGATGATGACATCTGGTGAAGCTGTCAAGTACAAGAGCTCCCTCGATG CATTCTCCCAGATTCTTAAGAACGAGGGTGCTAAATCCCTCTTCAAGGGTGCTGGTGCAAACATCCTCCGTGCTGTTGCTGGTGCTGGTGTGCTTGCCGG ATATGACAAGCTTCAGGTGATTGTCTTGGGAAAGAAGTACGGTTCCGGTGGGGCCTAA
AA sequence Show only first row Show all	>Potri.003G204600.1 pacid=42785340 polypeptide=Potri.003G204600.1.p locus=Potri.003G204600 ID=Potri.003G204600.1.v4.1 annot-version=v4.1 MADRRQQPSVMQKMASQVHLSSSFPQGFQRPALHRRQFAYGNYSNAGFQYAMTRPCQSSPDMSLVASSTAPVFVQAPSEKGLAGFAVDFLMGGVSAAVSK TAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGECFSRTIKDEGTMSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAA GGSSLLFVYSLDYARTRLANDAKAGKKGGERQFNGLVDVYRKTLKSDGIAGIYRGFNISCVGIIVYRGLYFGLYDSLKPVVLTGKLQDSFFASFALGWVI TNGASLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVLGKKYGSGGA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Potri.003G204600 [exp]	0	1
AT2G14110			Haloacid dehalogenase-like hyd...		Potri.017G043900 [exp]	20.19	0.7691
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G089301 [exp]	32.98	0.7698
AT3G62220			Protein kinase superfamily pro...		Potri.014G114200 [exp]	53.95	0.7784
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Potri.007G069600 [exp]	57.74	0.7838
AT1G80510			Transmembrane amino acid trans...		Potri.001G204400 [exp]	61.18	0.7940
AT3G10080			RmlC-like cupins superfamily p...		Potri.010G238200 [exp]	130.74	0.7697
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.015G003100 [exp]	138.96	0.7567	COMT1,Pt-OMT1.2
AT3G54040			PAR1 protein (.1)		Potri.006G094300 [exp]	284.99	0.7332

Compare expression of checked genes

Potri.003G204600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.