Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21200 211 / 2e-63 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G76870 188 / 3e-55 Trihelix unknown protein AT3G10040 159 / 7e-44 Trihelix sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G019200 [exp] 630 / 0 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1) Potri.002G068700 [exp] 217 / 2e-65 AT1G21200 445 / 1e-154 sequence-specific DNA binding transcription factors (.1) Potri.005G191700 [exp] 215 / 8e-65 AT1G21200 444 / 3e-154 sequence-specific DNA binding transcription factors (.1) Potri.006G117500 [exp] 189 / 1e-54 AT3G10040 249 / 3e-77 sequence-specific DNA binding transcription factors (.1) Potri.016G096300 [exp] 182 / 6e-52 AT3G10040 249 / 7e-78 sequence-specific DNA binding transcription factors (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029777 [exp] 244 / 6e-76 AT1G21200 503 / 9e-178 sequence-specific DNA binding transcription factors (.1) Lus10042805 [exp] 236 / 5e-73 AT1G21200 496 / 8e-175 sequence-specific DNA binding transcription factors (.1) Lus10028581 [exp] 178 / 1e-51 AT1G21200 369 / 8e-126 sequence-specific DNA binding transcription factors (.1) Lus10018886 [exp] 176 / 9e-51 AT1G21200 335 / 2e-113 sequence-specific DNA binding transcription factors (.1) Lus10035582 [exp] 176 / 1e-49 AT3G10040 326 / 2e-107 sequence-specific DNA binding transcription factors (.1) Lus10008643 [exp] 174 / 9e-49 AT3G10040 325 / 5e-107 sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G204700.1 pacid=42785914 polypeptide=Potri.003G204700.1.p locus=Potri.003G204700 ID=Potri.003G204700.1.v4.1 annot-version=v4.1 ATGGATAATTCGGGTTTGAGGGGTCGTTTTTTGTCTGATTCAAGTGGTGGTTTGTTAGACCTCGAGTCACCGATTCATAGACACCAACAATCTCAGTTAG GTCATCCCTCACTAGCGCACCAACATCAGATGAATGTAATGGGTTGTTTTGATAATGATCACCAACCAAGTGGGCTAATGGAAATGAAAGGTTCAACATC AAAAGGATATTTGGTGAATTTTGGTAAAGGAAGAGCTGCTAGTCCGTTTAACGGTGCACATAGTGGCGATGGGAGTGAAGATGATGACCAGAGTTTTATG GAAGATGGGAATGGTGAGAACTCTACTGGCGCTAAGGGCAAACAAGGGTCTCCATGGCAGCGAATGAAATGGACAGATAATATTGTTAGGCTTCTTATTT CAGTGGTTGCTTGTGTGGGTGATGACGATACATTTGATGGTACGGGGGGGCTTAAGAGAAAATCAGGGCTTTTGCAGAAGAAAGGTAAGTGGAAAACAGT GTCAAAGCTAATGATTGGCAAGGGGTGTCATGTTTCGCCACAACAGTGCGAGGATAAGTTCAATGATCTGAATAAGAGGTACAAGAGGTTGAATGAGATT CTTGGGAGGGGGACTAGTTGTAGAGTTGTGGAGAACCCCGCTCTTATGGACTCAATGCCTCATCTTTCAGCTAAGGCGAAGGATGATGTCAGAAAGATAT TGAGCTCGAAACATTTGTTTTATAAGGAAATTTGTGCTTACCATAACGGGCAAAGAATACCCAATTGCCAGGATTTTGATCTACAAGGTTGTTCATTACC TCTTGAGAGGTGCTCAAAAGATATGAATGGGTCAGGGGGGGATGAAGTTGAGGGAAATGATGACAGTGATGATGATGAATCGAATAATGAAGCTGATAAT AATGCTGATGAGAATGGGGAAAGTGTGGGCCAGTTGTGTGAAAGGATAGTGAATGAAGAGCATTCCCACCTTTGTTCTCAATCAGGTAGGCAAAATAGCT TTGGTGTTGAAATGACAGCAATTTTTCATGACACTAATGTATCGCCATGGGAGAGAAAGGAGTGGATTAAGAAGCAGAGGTTGCAACTCCTAGAGCAAAG GGTCAACATCAAGGCTCAAGCTTTTGAGCTTGAGAAACAACAGTTCAAGTGGTTGAGATACTGCAGCAAGAAAGATAAGGAGTTCGAGAGGTTGAGGCTG GAGAATGAGAGGTTGAGGCTGGAGAATAGGCAGAGTGCATTTCAACTGAGGCAGAAGCAACTGGAAATGGGTTTGAGGAGTTCAGAACCAGCATATGACC CTACTTCCCTTGGTATTGACAGAGTGCAAGGAAGAGATCAAATTGATCTGGGCAGACATCATTAG
AA sequence Show only first row Show all	>Potri.003G204700.1 pacid=42785914 polypeptide=Potri.003G204700.1.p locus=Potri.003G204700 ID=Potri.003G204700.1.v4.1 annot-version=v4.1 MDNSGLRGRFLSDSSGGLLDLESPIHRHQQSQLGHPSLAHQHQMNVMGCFDNDHQPSGLMEMKGSTSKGYLVNFGKGRAASPFNGAHSGDGSEDDDQSFM EDGNGENSTGAKGKQGSPWQRMKWTDNIVRLLISVVACVGDDDTFDGTGGLKRKSGLLQKKGKWKTVSKLMIGKGCHVSPQQCEDKFNDLNKRYKRLNEI LGRGTSCRVVENPALMDSMPHLSAKAKDDVRKILSSKHLFYKEICAYHNGQRIPNCQDFDLQGCSLPLERCSKDMNGSGGDEVEGNDDSDDDESNNEADN NADENGESVGQLCERIVNEEHSHLCSQSGRQNSFGVEMTAIFHDTNVSPWERKEWIKKQRLQLLEQRVNIKAQAFELEKQQFKWLRYCSKKDKEFERLRL ENERLRLENRQSAFQLRQKQLEMGLRSSEPAYDPTSLGIDRVQGRDQIDLGRHH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.003G204700 [exp]	0	1
AT2G17787			unknown protein		Potri.005G242300 [exp]	2.64	0.7412
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Potri.009G076600 [exp]	3.16	0.7276
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Potri.005G226500 [exp]	3.16	0.7673
AT1G01730			unknown protein		Potri.014G082600 [exp]	5.65	0.7329
AT4G03000			RING/U-box superfamily protein...		Potri.010G027900 [exp]	7.14	0.7086
AT5G67170			SEC-C motif-containing protein...		Potri.005G140500 [exp]	7.34	0.7278
AT1G60650		AtRZ-1b	AtRZ-1b, RNA-binding (RRM/RBD/...		Potri.008G033000 [exp]	8.48	0.7048
AT1G03350			BSD domain-containing protein ...		Potri.015G050700 [exp]	8.94	0.7632
AT5G51410			LUC7 N_terminus domain-contain...		Potri.001G124300 [exp]	11.31	0.7474
AT1G70740			Protein kinase superfamily pro...		Potri.010G109700 [exp]	14.07	0.6836

Compare expression of checked genes

Potri.003G204700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.