Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19620 892 / 0 TOC75-V, EMB213, TOC75, ATOEP80, OEP80 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) AT3G44160 221 / 1e-65 Outer membrane OMP85 family protein (.1) AT3G48620 152 / 9e-41 Outer membrane OMP85 family protein (.1) AT3G46740 97 / 2e-20 MAR1, TOC75-III, TOC75 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) AT4G09080 76 / 3e-14 TOC75-IV, ATTOC75-IV translocon at the outer envelope membrane of chloroplasts 75-IV, TRANSLOCON OUTER MEMBRANE COMPLEX 75-IV, Outer membrane OMP85 family protein (.1) AT1G35860 50 / 5e-06 TOC75-I translocon outer membrane complex 75-I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G019000 [exp] 1058 / 0 AT5G19620 936 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.009G017100 [exp] 232 / 8e-70 AT3G44160 598 / 0.0 Outer membrane OMP85 family protein (.1) Potri.001G215500 [exp] 223 / 2e-66 AT3G44160 581 / 0.0 Outer membrane OMP85 family protein (.1) Potri.001G072800 [exp] 89 / 5e-18 AT3G46740 1289 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Potri.003G158100 [exp] 73 / 5e-13 AT3G46740 1274 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031839 [exp] 915 / 0 AT5G19620 1030 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Lus10031272 [exp] 905 / 0 AT5G19620 1018 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Lus10013360 [exp] 172 / 5e-45 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10004104 [exp] 163 / 2e-44 AT3G44160 566 / 0.0 Outer membrane OMP85 family protein (.1) Lus10016508 [exp] 102 / 3e-22 AT3G46740 1179 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10004978 [exp] 96 / 4e-20 AT3G46740 1117 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10001566 [exp] 95 / 7e-20 AT3G46740 1210 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [poplar] [flax] MBB PF01103 [poplar] [flax] Omp85 Omp85 superfamily domain
Representative CDS sequence Show only first row Show all	>Potri.003G204900.1 pacid=42784759 polypeptide=Potri.003G204900.1.p locus=Potri.003G204900 ID=Potri.003G204900.1.v4.1 annot-version=v4.1 ATGATAAAAAACGACGACGTTTCCTTCACTTCTTCTGCTCTCAAAATCGCACCTTTCCTTCACCACCAAACTAAACCCTCTCTCCCTTTCTTCTCTCAAT TTGTCCAAACCAAACTCACCTTCCTCGACTCGCTCCTAACCCGCACCAGGTTCCCCAACTCACCCCTCCTCTGCTCTGCCTCGCTCTCCCTAACTCGGCC CTCCTCCCCCGGGCCGGACCCTAAATCCCTGCCGATCCTCTGCTCCGCGTCATTGTCTCTGAGTCAGTCTCAACTCCGTGATTCGACTCAGAGTGACTCG GTGGTGGCCCAGCAGAAGAGTGGTGGGGCGAGTGGGGTTCATGGGCCGAGTCGGTATGATGAGGAGAGGGTGTTGATAAGTGAAGTGTTGGTGAGGAATA AAGACGGGGAGGAACTGGAGAGGAAGGATTTGGAAGCTGAAGCTCTAGCTGCGTTAAAAGCTTGCCGTGCTAACTCAGCTCTTACGGTTCGTGAAGTTCA GGAGGATGTGCATAGGGTTATTAGTAGTGGGTACTTTTGCTCCTGTATGCCTGTTGCTGTTGACACACGTGATGGCATTCGACTGGTTTTTCAGGTAGAG CCAAACCAGGAGTTTCATGGGCTAGTATGCGAAGGGGCTAGTGTTCTTCCGACAAAGTTTTTACAGGATGCTTTTCGTGGCGGATATGGAAAAGTGGTTA ATATTAAGCAATTGGATGAAGTGATAAGTTCCATCAATAGCTGGTACATGGAGCGTGGTCTTTTTGGCATGGTCTCAAATGCTGAGATACTCTCTGGGGG TATTATAAGGTTACAAATTGCAGAAGCGGAGGTGAATGACATTTCCATACGCTTTCTTGACCGAAAAACTGGTGAACCAACCAAGGGGAAGACAAAGCCC GAGACGATACTTAGGCAACTTACAACCAAAAAGGGACAGGTCTACAGCATGCTTCAAGGGAAAAGAGATGTGGATACTGTGTTAACTATGGGAATCATGG AAGATGTTAGCTTTATTCCCCAACCTGCTGAAGATACTGGCAAAGTTGATTTGATAATGAATGTTGTTGAACGTCCAAATGGAGGATTTTCTGCTGGTGG TGGGATATCAAGTGGGACTACAAGTGGCTCTCTACCAGGACTTATTGGAAGCTTTGCATATTCTCATAGGAATGTTTTTGGACGAAACCAGAAACTTAAT ATTTCCCTTGAGAGGGGCCAAATTGACTCAATCTTTCGAATAAACTACACAGACCCCTGGATTGAAGGGGACGACAAACGGACTTCTAGAACAATTATGG TTCAGAATTCAAGAACCCCTGGGAATCTTGTTCATGGTAATCAACCTGTAAATAATAGCCTGACGATTGGCAGAGTTGCAGCTGGTATAGAATTTAGTAG ACCACTCAGACCAAAGTGGAGTGGAACAGTCGGACTTATTTTTCAGCATGCTGGTGCTCGTAATGAAAAAGGAGACCCTAAGATCAAAGACCATTACAAC AGCCCCCTCACTGCAAGTGGCAAGAATCATGATGATATGTTGCTTGCTAAATTTGAAAGTGTATATACAGGTTCTGGTGACCATGGCTCTTCAATGTTTG TGTTTAACATGGAACAAGGACTACCTCTTTGGCCCGAGTGGCTGTTTTTCAACAGAGTTAATACTCGTGCTAGAAAGGGTGTGGAAATTGGTCCTGCTCT TTGTCTTCTGAGTTTGTCTGGTGGTCATGTGATGGGTAATTTCTCTCCTCATGAAGCATTTGCCATTGGTGGAACAAACAGTGTGAGAGGATATGAAGAA GGGGCCGTGGGCTCTGGTCGATCTTATGCAGTTGGCTCGGGTGAAATTTCTTTCCCTGTGTTGGGACCAGTGGAAGGAGTTTTTTTTGCTGACTATGGAA CAGACCTTGGATCTGGACCCTCAGTGCCTGGTGATCCTGCTGGGGCAAGGCTGAAGCCTGGAAGTGGATATGGGTATGGCTTCGGCATCCGTGTGGACTC ACCATTAGGCCCTCTTCGGCTTGAATATGCATTTAATGACAGGCACACAAAGAGATTCCATTTTGGAGTAGGTCACCGAAATTAA
AA sequence Show only first row Show all	>Potri.003G204900.1 pacid=42784759 polypeptide=Potri.003G204900.1.p locus=Potri.003G204900 ID=Potri.003G204900.1.v4.1 annot-version=v4.1 MIKNDDVSFTSSALKIAPFLHHQTKPSLPFFSQFVQTKLTFLDSLLTRTRFPNSPLLCSASLSLTRPSSPGPDPKSLPILCSASLSLSQSQLRDSTQSDS VVAQQKSGGASGVHGPSRYDEERVLISEVLVRNKDGEELERKDLEAEALAALKACRANSALTVREVQEDVHRVISSGYFCSCMPVAVDTRDGIRLVFQVE PNQEFHGLVCEGASVLPTKFLQDAFRGGYGKVVNIKQLDEVISSINSWYMERGLFGMVSNAEILSGGIIRLQIAEAEVNDISIRFLDRKTGEPTKGKTKP ETILRQLTTKKGQVYSMLQGKRDVDTVLTMGIMEDVSFIPQPAEDTGKVDLIMNVVERPNGGFSAGGGISSGTTSGSLPGLIGSFAYSHRNVFGRNQKLN ISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGNLVHGNQPVNNSLTIGRVAAGIEFSRPLRPKWSGTVGLIFQHAGARNEKGDPKIKDHYN SPLTASGKNHDDMLLAKFESVYTGSGDHGSSMFVFNMEQGLPLWPEWLFFNRVNTRARKGVEIGPALCLLSLSGGHVMGNFSPHEAFAIGGTNSVRGYEE GAVGSGRSYAVGSGEISFPVLGPVEGVFFADYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEYAFNDRHTKRFHFGVGHRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.003G204900 [exp]	0	1
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.008G150100 [exp]	2.44	0.8741
AT5G40200		DEGP9	DegP protease 9 (.1)		Potri.012G077900 [exp]	2.82	0.8821
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Potri.010G189700 [exp]	4.69	0.8888
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Potri.013G032400 [exp]	4.89	0.8670
AT3G25060			Tetratricopeptide repeat (TPR)...		Potri.002G245200 [exp]	5.38	0.8904
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Potri.010G171300 [exp]	5.91	0.8739
AT1G80150			Tetratricopeptide repeat (TPR)...		Potri.001G171300 [exp]	8.94	0.8752
AT4G22860			Cell cycle regulated microtubu...		Potri.001G114400 [exp]	9.94	0.8581
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Potri.006G083100 [exp]	10.29	0.8012
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Potri.008G119500 [exp]	12.80	0.8268

Compare expression of checked genes

Potri.003G204900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.