Plant FIBer expression Database

Potri.003G205100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G20870 454 / 2e-162 ZTP29 zinc transporter 29, ZIP metal ion transporter family (.1)
AT3G08650 63 / 1e-10 ZIP metal ion transporter family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G018800
[exp]
490 / 1e-176 AT3G20870 436 / 3e-156 zinc transporter 29, ZIP metal ion transporter family (.1)
Potri.006G111200
[exp]
66 / 1e-11 AT3G08650 679 / 0.0 ZIP metal ion transporter family (.1.2)
Potri.016G140500
[exp]
56 / 2e-08 AT3G08650 334 / 4e-108 ZIP metal ion transporter family (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031268
[exp]
457 / 2e-163 AT3G20870 466 / 4e-168 zinc transporter 29, ZIP metal ion transporter family (.1)
Lus10031836
[exp]
391 / 5e-138 AT3G20870 402 / 2e-143 zinc transporter 29, ZIP metal ion transporter family (.1)
Lus10035606
[exp]
63 / 1e-10 AT3G08650 822 / 0.0 ZIP metal ion transporter family (.1.2)
Lus10003243
[exp]
62 / 2e-10 AT3G08650 842 / 0.0 ZIP metal ion transporter family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF02535 Zip ZIP Zinc transporter
Representative CDS sequence
>Potri.003G205100.1 pacid=42787076 polypeptide=Potri.003G205100.1.p locus=Potri.003G205100 ID=Potri.003G205100.1.v4.1 annot-version=v4.1
ATGTTCCTTTCTCTCAAACCATCCCTTTCTTTCTCCTCTTTATATTCTTTTCCTCTAAGCACAATCATTCCTTCAGTGGAGTGGTTATATAAACTAGCTC
TAAACAGTACTTGGGTCATTGTCATATACAGAAAAGAAGCATTTCTTTCAATGGATTCTCAGGTCATGGTAGCTTTGGCTCTGTCTCTTGTGGGTGGATT
AAGCACTTCTATAGGTGCACTCTTCGTAATTCTTTGTCAGACTCCCAATTTGAAGATGCTTGGGTTATTACAGGGTTTTGCTGCAGGCCTGATGCTGTGC
ATATCATTCCTTGATCTTGCTCATAATGCTATCAATTCAATTGGATTCTTAAAAGGCAACCTCTGGTTTTTTGGAGGTGTTGTATTCTTTGGTATCATCG
CCAATTTTATCCCAGAGCCAACACTTACCTCAAGCTTAGATGTTAAAAGTAAAAAGAAAAATGGTGACCAAGGGGGAAAGGAGATTTTGAAAAAGCAGCG
TCGCCAAGTTTTGTTCAGTGGCATTATCACTGCAATAGGAATAAGCTTGCATAACTTCCCAGAGGGAATGGCAGTGTTCCTTGGATCAATGAAGGGCCTC
CGTGTTGGTATTAATTTGGCTGTGGCAATTGCTTTGCACAACATTCCAGAGGGTGTTGCTGTTGCACTTCCTATTTATTTTGCAACACAGAGCAAGTGGC
AGGCATTCAAATTAGCTACACTTTGTGGTTTGGCTGAGCCACTTGGTGTGGTGCTTGTTGCTTATCTATTCCCAAGCAGCTTGAGTCCTGAAATTCTTGA
GGGTTTGCTGGGATCAGTTGGTGGAGTGATGGCTTTCCTCACCTTGCATGAAATGCTGCCACTGGCATTTGATTATGCTGGTCAGAAACAAGCTGTTAAG
GCCGTATTCTTTGGTATGGCTTTCATGTCTGCAAGCCTGTATTTTCTTGAAATCAGCCTACCTGATGAGATGAGCTTGTAG
AA sequence
>Potri.003G205100.1 pacid=42787076 polypeptide=Potri.003G205100.1.p locus=Potri.003G205100 ID=Potri.003G205100.1.v4.1 annot-version=v4.1
MFLSLKPSLSFSSLYSFPLSTIIPSVEWLYKLALNSTWVIVIYRKEAFLSMDSQVMVALALSLVGGLSTSIGALFVILCQTPNLKMLGLLQGFAAGLMLC
ISFLDLAHNAINSIGFLKGNLWFFGGVVFFGIIANFIPEPTLTSSLDVKSKKKNGDQGGKEILKKQRRQVLFSGIITAIGISLHNFPEGMAVFLGSMKGL
RVGINLAVAIALHNIPEGVAVALPIYFATQSKWQAFKLATLCGLAEPLGVVLVAYLFPSSLSPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQAVK
AVFFGMAFMSASLYFLEISLPDEMSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G20870 ZTP29 zinc transporter 29, ZIP metal... Potri.003G205100
[exp]
0 1
AT3G49810 ARM repeat superfamily protein... Potri.014G014300
[exp]
2.23 0.9337
AT2G24520 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase... Potri.018G006000
[exp]
7.14 0.9252 Pt-VHA1.1
AT1G73850 Protein of unknown function (D... Potri.012G056400
[exp]
10.95 0.9154
AT5G37180 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE S... Potri.017G139100
[exp]
13.85 0.9162
AT1G31880 BRX, NIP3;1, NL... BREVIS RADIX, DZC (Disease res... Potri.003G101500
[exp]
15.23 0.8885
AT2G46410 MYB CPC CAPRICE, Homeodomain-like supe... Potri.004G015100
[exp]
15.55 0.9096
AT5G24318 O-Glycosyl hydrolases family 1... Potri.015G010100
[exp]
15.87 0.9061
AT3G07420 ATNS2, SYNC2_AR... SYNTHETASE C2, asparaginyl-tRN... Potri.002G249700
[exp]
17.32 0.9108 Pt-SYNC2.1
AT1G06490 CalS7, ATGSL7, ... callose synthase 7, Arabidopsi... Potri.002G058700
[exp]
17.66 0.9117 ATGSL11.2
AT4G33490 Eukaryotic aspartyl protease f... Potri.007G099200
[exp]
19.97 0.9134

Potri.003G205100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.