Plant FIBer expression Database

Potri.003G205200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51790 305 / 3e-105 ATG1 transmembrane protein G1P-related 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031835
[exp]
292 / 1e-99 AT3G51790 306 / 2e-105 transmembrane protein G1P-related 1 (.1)
Lus10031267
[exp]
138 / 5e-41 AT3G51790 129 / 9e-38 transmembrane protein G1P-related 1 (.1)
Lus10031266
[exp]
133 / 2e-39 AT3G51790 155 / 2e-48 transmembrane protein G1P-related 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0021 OB PF03100 CcmE CcmE
Representative CDS sequence
>Potri.003G205200.1 pacid=42785485 polypeptide=Potri.003G205200.1.p locus=Potri.003G205200 ID=Potri.003G205200.1.v4.1 annot-version=v4.1
ATGTCCTCTCGCCTCTCCTCCATCCTCCGCCTCCGCTCCCACTTCCTCCACCGCATCCCCGCCACCACAACCACTACAACAGCCACCGCTCTCTTCCACA
ACTCCACCAAATCAAAATCCATAACCCTTACCTCCCTCTCGGATCTACATTCTCTCTCCACTCTCCGCTTCTTCTCCGCCTCCCGCCGCCACAGCCCCAC
TCGCCCCAAACCAGTTGACATCGGAGCTCGAGCCCGCCAACTCCAAAACCGTCGTCTCTGGACCTACGCCTTAACCTTCAGCTGCATAGCAGGTTTCATC
GTTATAGTGCTTAACAACTTTCAAGATCAATTAGTCTTTTACATAACACCAAGTGATGCGGTTGAGAAATTCAAGAACAACCCATCAAAGAACAAGTTCC
GATTAGGTGGTTTAGTCCTTGAAGGTAGCGTAGTTCATCCGTTAACAAGTCCTGAAATGGAATTCGTTGTCACTGATTTGATTACAGATATTTTAGTTAA
GTATGAAGGGTCCTTGCCTGATTTGTTTCGAGAAGGACATTCTGTTGTTGTTGAAGGGTTTATGAAGGAATTGGATGATAAGGTGAGGAAGGAAGTTGGG
TTGAAGAATGTTTCTGGGAAGGCGAGGAGTGGAGAGTGTTATTTTAAGGCGTTTGATGTCTTGGCTAAGCATGATGAGAAGTATATGCCTCAAGAAGTTG
CGGCCGCGATTGAGAGGAATAAGAAGTTGATCGAGGCTGGTGAAGTTGGGGAAGGTGGAGCTGAGAAGAAGAAGTGA
AA sequence
>Potri.003G205200.1 pacid=42785485 polypeptide=Potri.003G205200.1.p locus=Potri.003G205200 ID=Potri.003G205200.1.v4.1 annot-version=v4.1
MSSRLSSILRLRSHFLHRIPATTTTTTATALFHNSTKSKSITLTSLSDLHSLSTLRFFSASRRHSPTRPKPVDIGARARQLQNRRLWTYALTFSCIAGFI
VIVLNNFQDQLVFYITPSDAVEKFKNNPSKNKFRLGGLVLEGSVVHPLTSPEMEFVVTDLITDILVKYEGSLPDLFREGHSVVVEGFMKELDDKVRKEVG
LKNVSGKARSGECYFKAFDVLAKHDEKYMPQEVAAAIERNKKLIEAGEVGEGGAEKKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G51790 ATG1 transmembrane protein G1P-rela... Potri.003G205200
[exp]
0 1
AT1G03360 ATRRP4 ribosomal RNA processing 4 (.1... Potri.003G194400
[exp]
1.41 0.8114
AT4G28450 nucleotide binding;protein bin... Potri.017G014700
[exp]
3.87 0.7849
AT5G13890 Family of unknown function (DU... Potri.002G237200
[exp]
6.70 0.7294
AT3G11450 DnaJ domain ;Myb-like DNA-bind... Potri.003G190000
[exp]
7.07 0.7492
AT1G14060 GCK domain-containing protein ... Potri.013G109100
[exp]
7.41 0.7622
AT5G61770 PPAN PETER PAN-like protein (.1.2.3... Potri.014G129700
[exp]
9.16 0.7896
AT3G21860 ASK10 SKP1-like 10 (.1) Potri.005G094800
[exp]
11.83 0.7303
AT3G02650 Tetratricopeptide repeat (TPR)... Potri.001G361500
[exp]
18.97 0.7381
AT5G63150 unknown protein Potri.012G090700
[exp]
20.88 0.7664
AT3G58660 Ribosomal protein L1p/L10e fam... Potri.015G147700
[exp]
21.00 0.7553

Potri.003G205200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.