Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20860 486 / 3e-169 ATNEK5 NIMA-related kinase 5 (.1) AT3G44200 424 / 6e-138 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G04810 403 / 5e-134 ATNEK2 NIMA-related kinase 2 (.1.2) AT5G28290 397 / 3e-132 ATNEK3 NIMA-related kinase 3 (.1) AT1G54510 397 / 1e-131 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G12200 395 / 2e-131 ATNEK7 NIMA-related kinase 7 (.1.2) AT3G63280 392 / 1e-130 ATNEK4 NIMA-related kinase 4 (.1.2) AT1G50240 152 / 8e-39 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT3G53930 148 / 1e-37 Protein kinase superfamily protein (.1.2) AT3G07980 147 / 6e-37 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G018700 [exp] 941 / 0 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.016G051900 [exp] 518 / 3e-178 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.006G056300 [exp] 516 / 3e-177 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.001G218100 [exp] 424 / 6e-138 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.002G049400 [exp] 412 / 1e-137 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.009G020100 [exp] 421 / 8e-137 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.005G051600 [exp] 404 / 9e-134 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 392 / 1e-129 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.019G052500 [exp] 150 / 4e-38 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031834 [exp] 476 / 2e-164 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1) Lus10040499 [exp] 476 / 3e-162 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 471 / 5e-156 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10020244 [exp] 408 / 3e-136 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10013338 [exp] 419 / 4e-136 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10001783 [exp] 406 / 1e-135 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10001857 [exp] 416 / 5e-135 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10042632 [exp] 405 / 7e-135 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10015928 [exp] 374 / 1e-122 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10009186 [exp] 374 / 2e-122 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G205400.1 pacid=42786055 polypeptide=Potri.003G205400.1.p locus=Potri.003G205400 ID=Potri.003G205400.1.v4.1 annot-version=v4.1 ATGGAGACTAAGAACAAAGAAATGGTATCAAAGATGGATGATTATGGACTTATAGAGCAAATTGGAAGAGGAATTTTTGGAGCTGCATTTCTTGTTCTTC ATAAATTTGAGAATAAAAGGTATGTATTGAAGAAGATTCGTTTGGCTAAACAAACAGAAAAATTCAAGCAAACAGCATATCAAGAGATGAATTTGATATC GAAGCTGAATAATCCCTATATCGTGGAGTACAAAGATTCATGGGTGGAAAAGGAATCCTATGTATGCATCGTGACAAGTTACTGTGCGGGAGGAGACATG GCTCAGATGATAAAGAAAGCTAGAGGGACGTATCTTCCTGAAGAGAAACTCTGCAAATGGCTGACACAGTTGTTGCTTGCTGTGGACTACCTCCACTCCA ATCGTGTCCTTCACAGAGATTTAAAATGCTCTAACATATTCCTTACGAAAGATGGCAACATCCAGCTAGGTGACTTTGGACTTGCAAAATTGTTGAACAA GGAGGATCTTGCATCCACGATTGTAGGCACTCCCAAGTATATGTGTCCTGAACTTCTTGCAGACATACCTTATGGCTACAAATCGGACATTTGGTCTCTA GGTTGCTGTATGTTTGAGATAGCTGCACATCAACCTGCATTTAGAGCTCATGATATGGCTGGACTGATTAATAAGATAAATCGTTCTTCCATTTCTCCAC TCCCAGCTGCTTATTCCTCCACATTAAAACAGTTAATCAAAACCATGCTGAGAAAGAGCCCAGAACATAGACCAACAGCTGCAGAGTTGTTGAGGCACCC CCATCTGCAGCCATATCTTGCTAAATGCCAAAATCTATCTCTCGTGTTCCTCCCTGTAAAGTCCGAATACAGCTTCCTGGATAAACCAAAAGGAACCCGG TTACCTAACAAGTCTAGTGTTCACAAGAATAACATAGGTTTGAAAGCAAGTCCATCAAAGGGGTGCAGATGTTTTAAGCAGGATGCTTTTGAACAAAAAG TAGCAGCCAGTGATTTGTACAACAGTGCAGAAAAAACCGAAAGTGCCAACTCTGAAACCTCTTCAGCAAGTATTGCAAGGACTCACCCTGAAGACGAGAA GACAGAAATTGCTTCTAAGAAGTCACAAATAGTCCAAGAGAAGCTCTGTGGAGCTGGACAAGCTAGCATGGAATTCAAAAATGCTAGTCTTGGGATTTGC AAAAGAATGGAAAAGCTGTCTGAAGATTCAACAGGCTATGTTGGCCTTTCTGGTTACAAAAAGGCATCGGCATCCGCGATGGGTGACAAAACTGGACATG ATATGGAATTGGAACCCAAATTCTGCAAACTCCCAGCAGTAACAGAAATGAAATCAACACCATCAAAACCGCCCTGCGGAAATGATGTTGGACAAAAGGA AATGAACAGAACCCCTAGTGACATCTCATTGATCAGTTCACTGACTTCCCTACATGGTGATGAAATAAAGATTGAATGGAATCCTCAGAGCCTGCAAAGG GCAGATGCTCTGGAATCACTGCTAGAGATTTGTGCAAATTTGCTAAGACAGGAAAGGTATGAGGAGCTATCAGGAGTACTAGGACCCTTCAGCGAAGAAG CTGTGTCATCAAGAGAAACAGCAATTTGGTTGACAAAGAGCCTCATGAAACTCGAAAAAAATGGCAATGGAGCAGCTTAG
AA sequence Show only first row Show all	>Potri.003G205400.1 pacid=42786055 polypeptide=Potri.003G205400.1.p locus=Potri.003G205400 ID=Potri.003G205400.1.v4.1 annot-version=v4.1 METKNKEMVSKMDDYGLIEQIGRGIFGAAFLVLHKFENKRYVLKKIRLAKQTEKFKQTAYQEMNLISKLNNPYIVEYKDSWVEKESYVCIVTSYCAGGDM AQMIKKARGTYLPEEKLCKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKDGNIQLGDFGLAKLLNKEDLASTIVGTPKYMCPELLADIPYGYKSDIWSL GCCMFEIAAHQPAFRAHDMAGLINKINRSSISPLPAAYSSTLKQLIKTMLRKSPEHRPTAAELLRHPHLQPYLAKCQNLSLVFLPVKSEYSFLDKPKGTR LPNKSSVHKNNIGLKASPSKGCRCFKQDAFEQKVAASDLYNSAEKTESANSETSSASIARTHPEDEKTEIASKKSQIVQEKLCGAGQASMEFKNASLGIC KRMEKLSEDSTGYVGLSGYKKASASAMGDKTGHDMELEPKFCKLPAVTEMKSTPSKPPCGNDVGQKEMNRTPSDISLISSLTSLHGDEIKIEWNPQSLQR ADALESLLEICANLLRQERYEELSGVLGPFSEEAVSSRETAIWLTKSLMKLEKNGNGAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.003G205400 [exp]	0	1
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.001G188800 [exp]	7.07	0.8525	ATHB.12
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.003G050100 [exp]	12.96	0.8090	ATHB.11
AT1G61240			Protein of unknown function (D...		Potri.011G045300 [exp]	14.62	0.8369
AT4G30993			Calcineurin-like metallo-phosp...		Potri.006G187500 [exp]	19.87	0.8232
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.014G017500 [exp]	20.49	0.8178
AT5G12480		CPK7	calmodulin-domain protein kina...		Potri.001G257100 [exp]	20.92	0.8353	Pt-CPK7.2,CPK14
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.011G106200 [exp]	26.40	0.7744
AT1G32960		ATSBT3.3	Subtilase family protein (.1)		Potri.001G450600 [exp]	29.49	0.7530
AT1G16220			Protein phosphatase 2C family ...		Potri.001G473300 [exp]	30.19	0.8115
AT3G52120			SWAP (Suppressor-of-White-APri...		Potri.001G269900 [exp]	33.04	0.7870

Compare expression of checked genes

Potri.003G205400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.