Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20830 476 / 2e-167 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G51170 463 / 2e-162 Protein kinase superfamily protein (.1) AT3G25250 293 / 3e-95 AtOXI1, OXI1, AGC2-1 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G13000 284 / 2e-92 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G55910 241 / 3e-74 D6PK D6 protein kinase (.1) AT5G40030 241 / 3e-74 Protein kinase superfamily protein (.1) AT5G47750 241 / 2e-73 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT1G79250 239 / 8e-73 AGC1.7 AGC kinase 1.7 (.1.2) AT3G44610 234 / 2e-72 Protein kinase superfamily protein (.1) AT1G16440 236 / 3e-72 RSH3 root hair specific 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G018300 [exp] 728 / 0 AT3G20830 469 / 8e-165 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G248900 [exp] 273 / 1e-87 AT3G25250 419 / 7e-145 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.010G236200 [exp] 243 / 2e-75 AT3G44610 497 / 2e-174 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 234 / 1e-71 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.008G024000 [exp] 233 / 1e-71 AT3G44610 487 / 1e-170 Protein kinase superfamily protein (.1) Potri.006G003800 [exp] 236 / 3e-71 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.008G080600 [exp] 232 / 6e-70 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.004G186200 [exp] 228 / 8e-70 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 234 / 9e-70 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031830 [exp] 479 / 2e-168 AT3G20830 416 / 1e-144 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10031259 [exp] 268 / 7e-88 AT3G20830 257 / 2e-84 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038221 [exp] 274 / 1e-87 AT3G25250 434 / 1e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10025882 [exp] 268 / 3e-85 AT3G25250 434 / 2e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10006272 [exp] 247 / 5e-77 AT3G44610 591 / 0.0 Protein kinase superfamily protein (.1) Lus10020572 [exp] 243 / 2e-75 AT3G44610 585 / 0.0 Protein kinase superfamily protein (.1) Lus10043435 [exp] 236 / 6e-73 AT3G44610 466 / 2e-162 Protein kinase superfamily protein (.1) Lus10036150 [exp] 233 / 3e-72 AT2G34650 521 / 0.0 PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) Lus10022272 [exp] 235 / 1e-70 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10016629 [exp] 233 / 4e-70 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G205800.1 pacid=42784536 polypeptide=Potri.003G205800.1.p locus=Potri.003G205800 ID=Potri.003G205800.1.v4.1 annot-version=v4.1 ATGGAGCTACCACTATCTGCACCACCTCTATCGTCATCACAAAAACCACTGCTTCTTCCTCCACCACCACCGCCGGAAGACCAACAACACCAAAAAGACT TAGTCTTTGACAGCATTAGAGCTATCAAAGTCCTAGGCAAAGGAGCCATGGGGACAGTTTTTCTTGTCCATAATCAAGAAACCGACCCAACAGCCAAGAA CCCCTTTGCCCTCAAAGTAGTGGAAAAATCCACACTCCACACCAAGTTTGACGCCGAGCGCCGTGCACGGTGGGAGATCCAAGTTCTGAACCAATTATCC ACCCCAAAAACAGCCCACCCATTTCTCCCTCACCTCATTTCCTCCGTTGAAACTCAAGAATTCCTTGCATGGGCTGTCCCCTTTTGTCCTGGTGGTGACC TTAATGTCCTCCGCCACCGCCAAAACGACCACGTTTTCTCCCCTGCTGTAATCCGCTTTTATTTAGCTGAAATCGTCTGTGCCCTTGATCACCTCCACGA AATGGGCATTGTTTTCCGGGACTTAAAGCCTGAAAACATCCTGATACAACATTCTGGTCATGTGACTCTGACCGACTTTGATCTTTCTCGTACGTTAACG AGGAAAACGGTAAGAAATCTTATCTGTAACGCCGCCGCGTCCGGCTGTCATTTAATCACCGGCAACAGAATTGAACAACCTCAAAAGAAGCAGCAACAAC AGCATAGGAGGAACTTGACGAGGTGGTGGTTTGTCAATGATAATCAACAAAAGAAGAACGGGTTAAAGAAGGCAAAATCGGCACGAGTTAGTCCAGTGAG TCGGAGAAAACTGAGTTTCAACAACGGAGAACGATCCAATTCTTTCGTAGGCACAGAGGAATATGTCTCGCCGGAGGTTGTAAGAGGGGATGGACACGAG TTCGCCGTTGATTGGTGGGCTCTTGGGATTTTGAGCTACGAGATGTTGTACGGGACGACGCCGTTCAAGGGGAAGAACAGAAAGGAAACGTTTCGAAACG TTTTGTTGAAGAAGCCTGAGTTTGTTGGGAAACGAAACGATTTAACGGACTTGATTGAGCGGCTGTTAGAGAAGGACCCCACACAGAGGTTGGGGTATCA ACGTGGCGCTTGTGAGATTAAAGAGCATGGGTTTTTTAAAGGTGTTAGGTGGGACCTATTAACAGAAGTATTAAGACCGCCGTTTATTCCGTCAAGAGAG GACGGGGAGTTGACGGTAACGACAGGTGGGGTTGATATTAGGAAGTATTTTGAAGATTTAAGGGCGCCCCCTCCGTCAATGCCTCCGTCACCATCTTCGG ATTGTCATAGGAAGTTGTCCGAGTTCTAA
AA sequence Show only first row Show all	>Potri.003G205800.1 pacid=42784536 polypeptide=Potri.003G205800.1.p locus=Potri.003G205800 ID=Potri.003G205800.1.v4.1 annot-version=v4.1 MELPLSAPPLSSSQKPLLLPPPPPPEDQQHQKDLVFDSIRAIKVLGKGAMGTVFLVHNQETDPTAKNPFALKVVEKSTLHTKFDAERRARWEIQVLNQLS TPKTAHPFLPHLISSVETQEFLAWAVPFCPGGDLNVLRHRQNDHVFSPAVIRFYLAEIVCALDHLHEMGIVFRDLKPENILIQHSGHVTLTDFDLSRTLT RKTVRNLICNAAASGCHLITGNRIEQPQKKQQQQHRRNLTRWWFVNDNQQKKNGLKKAKSARVSPVSRRKLSFNNGERSNSFVGTEEYVSPEVVRGDGHE FAVDWWALGILSYEMLYGTTPFKGKNRKETFRNVLLKKPEFVGKRNDLTDLIERLLEKDPTQRLGYQRGACEIKEHGFFKGVRWDLLTEVLRPPFIPSRE DGELTVTTGGVDIRKYFEDLRAPPPSMPPSPSSDCHRKLSEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Potri.003G205800 [exp]	0	1
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.007G074070 [exp]	3.46	0.8227
AT4G22730			Leucine-rich repeat protein ki...		Potri.001G117800 [exp]	10.48	0.7809
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.014G070000 [exp]	20.00	0.7711
AT1G78110			unknown protein		Potri.002G094700 [exp]	22.71	0.7701
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G426030 [exp]	24.37	0.8258
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.005G097800 [exp]	28.58	0.7819
AT1G17620			Late embryogenesis abundant (L...		Potri.001G200700 [exp]	32.09	0.8189
					Potri.001G427210 [exp]	33.80	0.8034
AT5G57390	AP2_ERF	PLT5, EMK, CHO1...	PLETHORA 5, EMBRYOMAKER, CHOTT...		Potri.006G167700 [exp]	37.04	0.7904
AT5G24800	bZIP	BZO2H2, ATBZIP9	BASIC LEUCINE ZIPPER O2 HOMOLO...		Potri.006G277800 [exp]	38.79	0.8168

Compare expression of checked genes

Potri.003G205800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.