Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12950 1153 / 0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1) AT5G12960 1130 / 0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G018200 [exp] 1529 / 0 AT5G12950 1190 / 0.0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031258 [exp] 1266 / 0 AT5G12950 1128 / 0.0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1) Lus10031829 [exp] 1218 / 0 AT5G12950 1078 / 0.0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF07944 [poplar] [flax] Glyco_hydro_127 Beta-L-arabinofuranosidase, GH127
Representative CDS sequence Show only first row Show all	>Potri.003G206000.1 pacid=42785029 polypeptide=Potri.003G206000.1.p locus=Potri.003G206000 ID=Potri.003G206000.1.v4.1 annot-version=v4.1 ATGCAAATGGAAAAAGAAATGAATGGTTTGTTAGTTTTGGCCATGGTGTCTATGCTATGTAGTTTTGGTATCAGCAAGGAGTGTACAAACATCCCGACTC AGTTATCGTCACATTCATTTCGATATGAACTGTTATCATCACAGAATGAAACATGGAAAGAAGAAATGTTTGAACATTATCATTTGATACCTACCGATGA TTCTGCTTGGTCCAGTTTGCTGCCAAGAAAGATACTGAGAGAAGAAGATGAGCATAGCTGGGAAATGATGTATAGAAATTTGAAAAGTCCTTTGAAATCC TCTGGAAATTTCCTTAACGAAATGTCATTGCATAATGTGAGATTGGATCCAAGTTCAATCCATTGGAAGGCTCAACAAACAAACTTGGAGTACTTGTTGA TGTTGGATGTGAATAACTTGGTGTGGAGCTTTAGGAAAACTGCAGGTTCGTCTACACCAGGAAAAGCTTATGGTGGTTGGGAGAAACCGGATTCCGAGCT TCGAGGACATTTTGTAGGGCACTATTTGAGTGCATCAGCACAGATGTGGGCTAGTACTCATAATGAAACTCTAAAGAAGAAAATGTCTGCAGTAGTTTCT GCTCTATCTGCCTGTCAGGTGAAAATGGGAACAGGATACCTTTCTGCTTTCCCATCTGAATTATTTGATCGGTTTGAAGCTATAAAGCCAGTCTGGGCTC CTTATTACACCATTCATAAGATCCTAGCAGGTCTTTTGGACCAATATACATTGGCAGATAATGCTCAAGCTTTAAAAATGGTTAAGTGGATGGTTGATTA CTTTTACAATCGAGTTAGAAACGTTATAACCAATTACAGTGTTGAAAGGCATTATCTATCACTCAACGAGGAAACTGGTGGTATGAATGATGTCCTTTAC AAGTTATTTAGCATAACAGGAGATCCAAAGCATTTGGTGCTGGCTCACCTGTTTGACAAGCCTTGCTTCCTTGGTTTGCTTGCAGTACAGGCCGATGACA TATCAGGTTTCCACGCCAATACACATATCCCTGTTGTCATCGGTGCACAGATGCGATATGAAATCACTGGCGATCCTCTTTATAAGGATATAGGAGCATT CTTCATGGATGTAGTCAACTCTTCTCACAGCTATGCAACTGGAGGAACTTCTGTTAGCGAGTTCTGGTCAGATCCAAAGCGACTGGCTAGCACGTTACAG ACAGAAAATGAGGAATCCTGCACAACTTATAATATGCTGAAGGTCTCTCGCCACCTGTTCAGATGGACCAAAGAAATGGCTTATGCAGATTATTACGAGC GAGCTCTGACAAACGGTGTGCTAGGCATCCAAAGAGGAACAGAACCTGGAGTGATGATTTACATGCTTCCACAATATCCTGGAAGTTCCAAAGCCAAAAG CTATCATGGATGGGGGACTTCGTATGATTCTTTTTGGTGCTGCTATGGAACAGGAATTGAATCATTTTCAAAGCTGGGAGATTCCATATATTTTGAAGAA GGAGAAGCCCCAGGCCTTTACATCATTCAGTATATATCAAGCTCTCTTGATTGGAAATCTGGACAGATTGTGCTCAGTCAGAAAGTTGATCCTATCGTTT CTTCGGATCCATATCTTCGGGTGACATTAACCTTTTCTCCTAAGAAGGGGACTAGCCAAGCATCGACCTTGTATTTGCGGATACCAATTTGGACAAATTC AGAAGGTGCTACTGCAACAATAAATTCTCAGAGTTTGCGTCTACCAGCTCCAGGTAGTTTCTTATCAGTCAATAGAAAATGGAGAAGCAGTGACAAGCTA ACCCTTCAGATTCCCATCAGTTTGAGAACAGAGGCCATTAAAGATGAGCGGCATGAGTATGCTTCTGTTCAGGCAATACTTTATGGTCCTTACCTACTTG CTGGTCATACAAGTGGTGACTGGAACCTCAAATCCGGGTCAGGAAATTCTCTTTCAGACTCAATAACACCAATCCCTGGCTCTTATAATGGACAATTAGT ATCTTTTTCCCAAGAGTCTGGAATTTCGACTTTTGTGTTAACAAATTCAAACCAATCAATATCAATGGAAAAGCTCCCGGAATCAGGCACCGATGCTTCT CTACAAGCCACCTTTAGACTTGTATTTAAAGACTCTTCTTCCTCGAAACTCTCAAGTGTTAAAGATGTTATTGGAAAATCAGTCATGCTTGAACCCTTTC ATCTTCCTGGAATGCTTTTAGTGCAGCAAGGAAAAGACAGAAGCTTTACACTCACAAATTCTGCTGATGATGATGGATCATCTATCTTCCGCGTGGTTTC TGGATTGGATGGAAAAGACGGAACTGTATCCCTGGAATCAGGTATCCAGAATGGTTGCTACGTGTACAGTGGTGTGGATTATAAGTCAGGTCAAAGCATG AAGCTTAGCTGCAAATCAGGGTCATCATCAGATACTGGTTTTAATCAGGGAGCCAGCTTTGTAATGAACAAGGGACTAAGTCAATATCATCCAATCAGCT TTGTTGCAAAGGGGGACAAAAGAAATTTTCTTCTTGCACCATTACATAGTCTGAGAGATGAATCTTACACTATTTATTTTAACATTCAACCTTAA
AA sequence Show only first row Show all	>Potri.003G206000.1 pacid=42785029 polypeptide=Potri.003G206000.1.p locus=Potri.003G206000 ID=Potri.003G206000.1.v4.1 annot-version=v4.1 MQMEKEMNGLLVLAMVSMLCSFGISKECTNIPTQLSSHSFRYELLSSQNETWKEEMFEHYHLIPTDDSAWSSLLPRKILREEDEHSWEMMYRNLKSPLKS SGNFLNEMSLHNVRLDPSSIHWKAQQTNLEYLLMLDVNNLVWSFRKTAGSSTPGKAYGGWEKPDSELRGHFVGHYLSASAQMWASTHNETLKKKMSAVVS ALSACQVKMGTGYLSAFPSELFDRFEAIKPVWAPYYTIHKILAGLLDQYTLADNAQALKMVKWMVDYFYNRVRNVITNYSVERHYLSLNEETGGMNDVLY KLFSITGDPKHLVLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGAQMRYEITGDPLYKDIGAFFMDVVNSSHSYATGGTSVSEFWSDPKRLASTLQ TENEESCTTYNMLKVSRHLFRWTKEMAYADYYERALTNGVLGIQRGTEPGVMIYMLPQYPGSSKAKSYHGWGTSYDSFWCCYGTGIESFSKLGDSIYFEE GEAPGLYIIQYISSSLDWKSGQIVLSQKVDPIVSSDPYLRVTLTFSPKKGTSQASTLYLRIPIWTNSEGATATINSQSLRLPAPGSFLSVNRKWRSSDKL TLQIPISLRTEAIKDERHEYASVQAILYGPYLLAGHTSGDWNLKSGSGNSLSDSITPIPGSYNGQLVSFSQESGISTFVLTNSNQSISMEKLPESGTDAS LQATFRLVFKDSSSSKLSSVKDVIGKSVMLEPFHLPGMLLVQQGKDRSFTLTNSADDDGSSIFRVVSGLDGKDGTVSLESGIQNGCYVYSGVDYKSGQSM KLSCKSGSSSDTGFNQGASFVMNKGLSQYHPISFVAKGDKRNFLLAPLHSLRDESYTIYFNIQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12950			Putative glycosyl hydrolase of...		Potri.003G206000 [exp]	0	1
AT3G21250		ATMRP6, ABCC8	ARABIDOPSIS THALIANA MULTIDRUG...		Potri.003G034700 [exp]	3.74	0.9489
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.013G075400 [exp]	4.89	0.9600
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Potri.013G076100 [exp]	10.00	0.9397
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Potri.009G043200 [exp]	10.19	0.9471
AT3G14470			NB-ARC domain-containing disea...		Potri.017G145000 [exp]	10.58	0.9404
AT1G49380			cytochrome c biogenesis protei...		Potri.009G111692 [exp]	10.81	0.9472
AT5G42390		SPP	stromal processing peptidase, ...		Potri.014G149200 [exp]	11.83	0.9366
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Potri.017G093200 [exp]	14.89	0.8999
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.018G102500 [exp]	16.49	0.9341
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.001G249800 [exp]	17.54	0.9424

Compare expression of checked genes

Potri.003G206000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.