Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31980 254 / 1e-77 unknown protein AT2G28580 199 / 5e-58 Plant protein of unknown function (DUF247) (.1) AT3G50150 195 / 7e-57 Plant protein of unknown function (DUF247) (.1) AT3G50160 190 / 5e-55 Plant protein of unknown function (DUF247) (.1) AT3G50170 189 / 2e-54 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT5G11290 184 / 2e-54 Plant protein of unknown function (DUF247) (.1) AT2G44930 186 / 1e-53 Plant protein of unknown function (DUF247) (.1) AT3G50120 184 / 1e-52 Plant protein of unknown function (DUF247) (.1) AT1G67150 179 / 1e-51 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT5G22540 176 / 2e-50 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G206201 [exp] 682 / 0 AT4G31980 281 / 7e-88 unknown protein Potri.003G206301 [exp] 607 / 0 AT4G31980 270 / 1e-83 unknown protein Potri.003G206501 [exp] 397 / 1e-135 AT4G31980 308 / 1e-97 unknown protein Potri.003G209832 [exp] 388 / 1e-132 AT4G31980 278 / 8e-87 unknown protein Potri.003G208700 [exp] 384 / 1e-130 AT4G31980 276 / 5e-86 unknown protein Potri.003G208750 [exp] 384 / 1e-130 AT4G31980 276 / 5e-86 unknown protein Potri.003G208600 [exp] 384 / 1e-130 AT4G31980 276 / 5e-86 unknown protein Potri.003G209000 [exp] 380 / 3e-129 AT4G31980 286 / 9e-90 unknown protein Potri.003G207802 [exp] 378 / 1e-128 AT4G31980 273 / 9e-85 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039780 [exp] 206 / 1e-61 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 202 / 3e-60 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 200 / 1e-59 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 188 / 2e-54 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 187 / 4e-54 AT4G31980 251 / 5e-76 unknown protein Lus10038339 [exp] 185 / 2e-53 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 183 / 1e-52 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 178 / 4e-51 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 171 / 5e-48 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10024948 [exp] 164 / 4e-45 AT4G31980 180 / 2e-49 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.003G206101.1 pacid=42785356 polypeptide=Potri.003G206101.1.p locus=Potri.003G206101 ID=Potri.003G206101.1.v4.1 annot-version=v4.1 ATGGATCAGAGCGATGAAGTTTCACTTGATGTCAATGAGTTAGCTATTTCTTTAAGGGAGCAATTGAAAATCAAGAAGGCTTTCTCCCTGGCATGCTGCA TCTACAGAGTCCCGGAACGATTGCGGAAGTTAAATGAAAAGGCATATACACCTCGAGTAGTCTCAATAGGCCCTATTCACCATGGTAAGGAAAATCTAAA AGCTATGGAAGACCACAAAATAATGTACTTGCAGCAGTTTCTCGAACAGAATTTATTAGTAAGTGTGGAGGATTTAATTAACATTATCAAGGAGAATGAA ACGGAATTACGTGATAGTTATGCCGAAACCATTAATCTTGGTAGGAAAGACTTCGTAACAATGATCTTACTGGATGCTGTCTTCATTATTATGGTCTTAC TGAACATTAAGTACTTGAGCGGGTTTTATGAAAGTAGACGTAGTGACCACATTTTCTATCGTCCATTTAAGTTTGCTGATGTATTGTTTGATATGAGCTT GCTTGAAAATCAGCTTCCATTCTTCATCCTCCAGAAGTTGCTTGAGCTATCCAGTGTAGCTGCCAATCCTGAGAATTGTACCCTTATTGAGCTTAGCTGT GGGTTATTGAAAGGTCAATGGTCTGACTGGGTGAAAGAGGACAGTTGGAAAATAATCGATTCCTCTAGAGTCCTACATTTCGTTGACTTCCTAAGCAAGT GTCAGCAGCCAACAGAGAAGCACCGTCCAGCGAAAGAAGAAGCTTTCTTAAGCGCACCCACTGCGACGGAGCTCCATCAATCTGGAGTGAAGTTTAAGAA TACAGAAAGAAGCTCACTATTTGACATAACATTCAGTAATGGGATTCTAGAAATTCCACAACTAAAAATATATGATGTGATAGAAATCTTATTCAGAAAT CTCCAGGCCTTTGAGCAATGCCATCATGCGAACGGGGATACTTTCGTAAATGACTATATTACTTTCATCAGCTGCCTCGTCAGTGCTACCAAAGATGTGG AAGTACTTGCTCACAATGAGAATATGAAAAATATGCTAAGCAGTGACGAAGCAGTGTCAAATCTTTTTCACAATCTTTTCATAGAAAATGTTATCTCTTC AGAAAGTTTTCTTTCGGGTCTCTGCGAAGAGCTGAATTTACATTGCAGAAAGCGTAGGTACAAGTGGAAGGCAACCTTGAAGCAGGTTTACTTCAACAAT CCATGGACTGGCATCTCCGTTGTTGCTGCTACTTTTCTCCTTGTACTCACTGTCATACAAACGGTGTGCTCTATCCTTCAATTGTGA
AA sequence Show only first row Show all	>Potri.003G206101.1 pacid=42785356 polypeptide=Potri.003G206101.1.p locus=Potri.003G206101 ID=Potri.003G206101.1.v4.1 annot-version=v4.1 MDQSDEVSLDVNELAISLREQLKIKKAFSLACCIYRVPERLRKLNEKAYTPRVVSIGPIHHGKENLKAMEDHKIMYLQQFLEQNLLVSVEDLINIIKENE TELRDSYAETINLGRKDFVTMILLDAVFIIMVLLNIKYLSGFYESRRSDHIFYRPFKFADVLFDMSLLENQLPFFILQKLLELSSVAANPENCTLIELSC GLLKGQWSDWVKEDSWKIIDSSRVLHFVDFLSKCQQPTEKHRPAKEEAFLSAPTATELHQSGVKFKNTERSSLFDITFSNGILEIPQLKIYDVIEILFRN LQAFEQCHHANGDTFVNDYITFISCLVSATKDVEVLAHNENMKNMLSSDEAVSNLFHNLFIENVISSESFLSGLCEELNLHCRKRRYKWKATLKQVYFNN PWTGISVVAATFLLVLTVIQTVCSILQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31980			unknown protein		Potri.003G206101 [exp]	0	1
AT4G31980			unknown protein		Potri.003G207750 [exp]	2.23	0.9406
AT5G38780			S-adenosyl-L-methionine-depend...		Potri.017G122700 [exp]	2.82	0.9454
AT1G15125			S-adenosyl-L-methionine-depend...		Potri.017G122900 [exp]	7.00	0.9303
AT4G31980			unknown protein		Potri.003G206201 [exp]	16.15	0.9511
					Potri.008G163401 [exp]	16.97	0.9010
AT1G62600			Flavin-binding monooxygenase f...		Potri.013G019900 [exp]	23.23	0.9129
AT1G15125			S-adenosyl-L-methionine-depend...		Potri.017G122950 [exp]	24.73	0.9177
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.010G202300 [exp]	24.81	0.9288
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032650 [exp]	26.83	0.9079
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G469000 [exp]	33.04	0.9213

Compare expression of checked genes

Potri.003G206101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.