Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PGI.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) AT5G12940 473 / 1e-167 Leucine-rich repeat (LRR) family protein (.1) AT3G12610 405 / 5e-141 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT2G26380 182 / 4e-53 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 178 / 2e-51 Leucine-rich repeat (LRR) family protein (.1) AT1G33590 172 / 4e-49 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 169 / 4e-48 Leucine-rich repeat (LRR) family protein (.1) AT3G12145 165 / 7e-48 FLOR1, FLR1 FLOR1, Leucine-rich repeat (LRR) family protein (.1) AT1G33670 160 / 5e-45 Leucine-rich repeat (LRR) family protein (.1) AT1G33612 159 / 2e-44 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G017500 [exp] 635 / 0 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.009G064300 [exp] 465 / 1e-164 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 457 / 1e-161 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.006G058600 [exp] 171 / 3e-50 AT5G06860 383 / 1e-133 polygalacturonase inhibiting protein 1 (.1) Potri.013G098850 [exp] 171 / 6e-49 AT1G33590 629 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.013G098900 [exp] 171 / 6e-49 AT1G33590 582 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G040200 [exp] 170 / 4e-47 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.016G049400 [exp] 160 / 3e-46 AT5G06860 372 / 2e-129 polygalacturonase inhibiting protein 1 (.1) Potri.016G049600 [exp] 159 / 1e-45 AT5G06860 354 / 3e-122 polygalacturonase inhibiting protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031824 [exp] 507 / 0 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002551 [exp] 465 / 2e-164 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10037705 [exp] 422 / 1e-147 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10010949 [exp] 421 / 3e-147 AT3G20820 440 / 8e-155 Leucine-rich repeat (LRR) family protein (.1) Lus10031377 [exp] 415 / 5e-145 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10015700 [exp] 320 / 5e-109 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10031254 [exp] 238 / 6e-78 AT3G20820 269 / 2e-90 Leucine-rich repeat (LRR) family protein (.1) Lus10041064 [exp] 166 / 3e-47 AT1G33590 488 / 3e-171 Leucine-rich repeat (LRR) family protein (.1) Lus10021028 [exp] 160 / 7e-46 AT5G06860 362 / 2e-125 polygalacturonase inhibiting protein 1 (.1) Lus10023824 [exp] 156 / 2e-44 AT5G06860 366 / 1e-126 polygalacturonase inhibiting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G207000.1 pacid=42784508 polypeptide=Potri.003G207000.1.p locus=Potri.003G207000 ID=Potri.003G207000.1.v4.1 annot-version=v4.1 ATGACAATGTTTTCTTACATTACATTACTAGCAACCTTAACAATATTCATCTCTACTTGTACAGTTCGAAGCTGTCCTCCTTCAGACAGGGCAGCTTTGC TAGCTTTCAAAGCAGCTCTCCACGAGCCTTACTTGGGCATCTTCAATTCTTGGGCGGGCACCGATTGTTGCCGTAACTGGTATGGTGTCAGCTGTGACAT GGAGACCAAAAGGGTTGCTGACATTAACCTCCGAGGTGAATCTGAAGACCCCATTTTCCAAAAAGCTGGTCGGTCCGGGTACATGACTGGTTCGATCTCT CCTTCTATTTGCAAGCTCAAGAGGCTCTCCAGTCTTACAATTGCTGATTGGAAAGGGATCTCAGGTCCGATTCCAGCCTGCATTACGTCGTTGCCGTTCT TGAGGATTCTTGATTTGATTGGGAATCGGCTTTCAGGCCCGATTCCGGAAGACATCGGACGGTTGCACAGGCTGACCGTTTTGAATATCGCCGACAATCT TGTAACAAGTAGGATCCCGAGATCCTTGACTAATTTGTCGAGTTTGATGCATCTCGATTTGCGTAACAATCGGATTTGGGGTTCTTTGCCTCGAGATTTC GGGCGTCTTCGGATGTTGAGTCGTGCTTTATTGAGCCGAAATTATATTGGCGGGACAATTCCCGATTCAATTTCTAAAATTTATCGTCTCGCCGATTTGG ATCTTTCCTTGAACAGATTATCGGGCGAAATACCAGCTTCTTTGGGTAAAATGGCAGTCTTGGCAACACTAAATCTTGATGCCAACAACTTATCAGGAAA TATACCTTATAGTTTGTTTAATTCAGCTATTGGTAACTTGAATTTGAGCAAAAACTCATTTCATGGATATCTACCGGATGTTTTCGGTCCGGGATCTTAC TTCATGGTTCTTGATCTATCCTACAATAACTTTTGGGGTCTGATACCAAAATCTTTGTCCCAAGCATCATTTATCGGGCACTTGGATTTGAGTCACAACC GCCTATGTGGGAGGATTCCAGCAGGTCCGCCTTTCGACCACCTCGAAGCATCATCGTTTGCTTATAATGCTTGTCTTTGCGGTAAGCCACTCGGAGCTTG CAGGTAG
AA sequence Show only first row Show all	>Potri.003G207000.1 pacid=42784508 polypeptide=Potri.003G207000.1.p locus=Potri.003G207000 ID=Potri.003G207000.1.v4.1 annot-version=v4.1 MTMFSYITLLATLTIFISTCTVRSCPPSDRAALLAFKAALHEPYLGIFNSWAGTDCCRNWYGVSCDMETKRVADINLRGESEDPIFQKAGRSGYMTGSIS PSICKLKRLSSLTIADWKGISGPIPACITSLPFLRILDLIGNRLSGPIPEDIGRLHRLTVLNIADNLVTSRIPRSLTNLSSLMHLDLRNNRIWGSLPRDF GRLRMLSRALLSRNYIGGTIPDSISKIYRLADLDLSLNRLSGEIPASLGKMAVLATLNLDANNLSGNIPYSLFNSAIGNLNLSKNSFHGYLPDVFGPGSY FMVLDLSYNNFWGLIPKSLSQASFIGHLDLSHNRLCGRIPAGPPFDHLEASSFAYNACLCGKPLGACR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20820			Leucine-rich repeat (LRR) fami...		Potri.003G207000 [exp]	0	1	Pt-PGI.2
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Potri.005G006500 [exp]	5.47	0.8685
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.008G120000 [exp]	7.48	0.8961	XYL1.2
AT1G72190			D-isomer specific 2-hydroxyaci...		Potri.013G104200 [exp]	10.67	0.8452
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.005G120500 [exp]	11.31	0.8821
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Potri.019G091900 [exp]	11.31	0.8506
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Potri.010G190600 [exp]	13.41	0.8236
AT3G48550			unknown protein		Potri.012G097901 [exp]	15.58	0.8395
AT3G08030			Protein of unknown function, D...		Potri.001G263900 [exp]	18.33	0.8407
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.006G245600 [exp]	23.30	0.8813
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.003G087600 [exp]	25.21	0.8052

Compare expression of checked genes

Potri.003G207000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.