Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76320 947 / 0 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT4G15090 676 / 0 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G22170 624 / 0 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT2G32250 513 / 2e-171 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4) AT4G19990 478 / 1e-158 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT4G38180 433 / 8e-141 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT2G27110 370 / 4e-116 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT1G52520 338 / 3e-105 FAR1_related FRS6 FAR1-related sequence 6 (.1) AT1G80010 323 / 2e-99 FAR1_related FRS8 FAR1-related sequence 8 (.1) AT3G06250 300 / 1e-90 FAR1_related FRS7 FAR1-related sequence 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G110300 [exp] 710 / 0 AT4G15090 799 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.006G020700 [exp] 697 / 0 AT3G22170 1184 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.016G018300 [exp] 682 / 0 AT3G22170 1139 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.006G020600 [exp] 671 / 0 AT4G15090 1078 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.016G018100 [exp] 613 / 0 AT2G32250 793 / 0.0 FAR1-related sequence 2 (.1.2.3.4) Potri.004G209000 [exp] 450 / 2e-147 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.009G170100 [exp] 442 / 2e-144 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.011G145800 [exp] 436 / 9e-142 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.004G196300 [exp] 386 / 9e-122 AT2G27110 1115 / 0.0 FAR1-related sequence 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 743 / 0 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10010073 [exp] 49 / 2e-05 AT1G64260 155 / 3e-39 MuDR family transposase (.1) Lus10020226 [exp] 44 / 0.0004 AT3G59470 120 / 7e-33 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10026854 [exp] 43 / 0.0007 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0274 [poplar] [flax] PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.003G207100.1 pacid=42786830 polypeptide=Potri.003G207100.1.p locus=Potri.003G207100 ID=Potri.003G207100.1.v4.1 annot-version=v4.1 ATGGATTCCAGTGTGATCACAGGCAGTGCAATTCCAGAACCTCGTGATGGTATTGAATTTGAATCACATGAAGCTGCATATTCATTTTACAAAGATTATG CCAAGTCTGTAGGCTTTGGTACTGCTAAGTTGAGTAGCAGGCGATCTAGGTCATCAAAAGAATTCATTGATGCAAAATTCTCATGCATAAGGTATGGGAA TAAGCAGCAGTCTGATGATGCCATTAATCCACGACCCTCCCCAAAAATTGGCTGTAAAGCTAGCATGCATGTGAAGAGAAGACAGAATGGAAAATGGTAC ATATACAGTTTTGTAAAAGAACACAATCATGAGCTTTTACCAGCCCAGGTGCACTTCTTTCGAAGCCATAGAAATGATGATCCTCTTAAGAATGACATCC GGATACGACGACGAAAGAATCTGTCTTCAGTTTCCAAACTTTTTGGTGCATATCAAAATGTGGATTGTTTAGAGGGTTACATGAGAAATCAGCATGATAA GGGGCGGAGTTTGGTCTTAGAATCAGGAGATGCTCAGGTATTACTAGACCTTTTTATGCATATGCAGGAAGAGAACCCTAAGTTCTTCTATGCTGTTGAT TTGAATGAAGAGCATCGGTTGAGAAACTTGTTTTGGGTTGATACAAAAGGAATGGAAGACTACAGCAACTTTGATGATGTAGTTTGTTTTGACACTACAT ATTTCACAAACAAGTATAAAATACCATTAGTTTTCTTTATTGGGGTGAATCATCATATTCAACCCACATTGCTTGGTTGTGCATTGATAGCAGATGAGAC AGTTTATACTTTTGATTGGTTAATGCAAACATGGTTCATGGCAATGGGGGAACGTGCTCCACAATTAATGCTCACTGATCAAAACAACGCCTTAAAAGCA GCTATTGGAGCAGTCTTTCCACAAACATGTCATTGTTTTTGTCTTTGGCATATATTGGAGAAGATCCCTAGGCAGCTTGAATATTTGAGTCTTTGGCATG ATAATTTTATGGTAAAATTTAATAAATGTATTTTTAAATCATGGACCGAGGAACAATTTGAAAAGAGATGGTCGAAGTTGCTTGACAAATTTAATCTTCG AGAGGTTGAATGGGTTCGATCGTTATATGAAGATCGCAAATATTGGGTGCCTGCCTTCATGAGAGATGTATCATTTGCTGGTTTGTCTACAATGTCGCGC TCTGAAAGCTTGACCTCTTCATATGAGAAATATGTGCATGCAGAAACATCAATGAGAGAGTTTATAGAACAATACAAAACGATTCTTGAAGATAGGTATG AAGAGGAAGCCAAGGCAGATTTTGATGCATGGCATGAAACGGCTGAGTTAAAATCCCCATCACCTTTCGAGAAGCAAATGTCACTGGTGTACACACATGA AATTTTCAGGAAATTCCAAGTTGAGGTTCTGGGAGCAGCTGCTTGTCATCTTAAGAAAGAAAGTCAGGATGAGACAACCACAATGTATACTGTGAAGGAC TTTGAAGACGGTCAGAATTACGTGGTGGAATGGAATGAAACAAAATCAGATATTTATTGTTCATGTCGTTCTTTTGAATACAAAGGTTATCTCTGTAGAC ATGCTATTGTTGTTCTTCAAATGTCAGGCGTGTTCAGCATTCCACCTAAATATGTATTGCAACGTTGGACAAATGCTGCTTTGAGCAGGCATCCCATCAG TGAAAGATTGGATGAGGTGCAAACTAAGGTCCGTCGCTATAATGACTTGTGTCGACGAGCCATAATACTAGGTGAAGAGGGGTCTCTTTCACAGGAGAGT TACAACATCGCACTTTGTGCTATAAGAGAAGCTTTGAAACAATGTGCGAGTTTAAATAACTCTGCTGAAACCAGTGCTTGTCCTAACACCTCAGGGAGCA TTGAGGAAGAGAATCAGTACAGGAATACTTCTAAAGAGAGGGCACCAGATCTTCAGGTTACTGGTGCAGACAAGGCTACTAGAAGAGCTGGAGCAGCAAA CACAAAGGAAAGTAACCACAGTGGTGCGGTTAAAAAGGGAAAGCAGGTAACTCGGTCAGGAGATGTGAACGTTGGGGGACAGGAAGGCTTCCATTTAATG GGCATATCTGACCTGGGGCCAACACAATCACATAATATGATGCCAGCACAGTTGCAAAATGCTGTACCTACAGTATTTCATAATATCATGCCGACTCAGT TCCAAAACATAGCTTCAACACATTTGCACGATACGAGACTCCCTCGTTAG
AA sequence Show only first row Show all	>Potri.003G207100.1 pacid=42786830 polypeptide=Potri.003G207100.1.p locus=Potri.003G207100 ID=Potri.003G207100.1.v4.1 annot-version=v4.1 MDSSVITGSAIPEPRDGIEFESHEAAYSFYKDYAKSVGFGTAKLSSRRSRSSKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQNGKWY IYSFVKEHNHELLPAQVHFFRSHRNDDPLKNDIRIRRRKNLSSVSKLFGAYQNVDCLEGYMRNQHDKGRSLVLESGDAQVLLDLFMHMQEENPKFFYAVD LNEEHRLRNLFWVDTKGMEDYSNFDDVVCFDTTYFTNKYKIPLVFFIGVNHHIQPTLLGCALIADETVYTFDWLMQTWFMAMGERAPQLMLTDQNNALKA AIGAVFPQTCHCFCLWHILEKIPRQLEYLSLWHDNFMVKFNKCIFKSWTEEQFEKRWSKLLDKFNLREVEWVRSLYEDRKYWVPAFMRDVSFAGLSTMSR SESLTSSYEKYVHAETSMREFIEQYKTILEDRYEEEAKADFDAWHETAELKSPSPFEKQMSLVYTHEIFRKFQVEVLGAAACHLKKESQDETTTMYTVKD FEDGQNYVVEWNETKSDIYCSCRSFEYKGYLCRHAIVVLQMSGVFSIPPKYVLQRWTNAALSRHPISERLDEVQTKVRRYNDLCRRAIILGEEGSLSQES YNIALCAIREALKQCASLNNSAETSACPNTSGSIEEENQYRNTSKERAPDLQVTGADKATRRAGAANTKESNHSGAVKKGKQVTRSGDVNVGGQEGFHLM GISDLGPTQSHNMMPAQLQNAVPTVFHNIMPTQFQNIASTHLHDTRLPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76320	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)		Potri.003G207100 [exp]	0	1
AT5G64160			unknown protein		Potri.001G206032 [exp]	3.46	0.8717
AT4G13010			Oxidoreductase, zinc-binding d...		Potri.001G343000 [exp]	5.74	0.8640
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Potri.011G109800 [exp]	7.00	0.8345
					Potri.009G036201 [exp]	8.36	0.8447
AT5G15080			Protein kinase superfamily pro...		Potri.004G123800 [exp]	12.12	0.8068
AT4G27740			Yippee family putative zinc-bi...		Potri.015G009100 [exp]	14.14	0.8311
					Potri.013G126650 [exp]	14.89	0.8356
					Potri.001G426980 [exp]	15.55	0.8304
AT2G30620			winged-helix DNA-binding trans...		Potri.008G162300 [exp]	16.43	0.8124
AT1G49760		PABP8, PAB8	poly(A) binding protein 8 (.1)...		Potri.002G124200 [exp]	18.43	0.8127

Compare expression of checked genes

Potri.003G207100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.