Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42280 221 / 1e-68 bHLH bHLH130 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G51140 204 / 9e-62 bHLH bHLH122 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09180 143 / 1e-39 bHLH bHLH081 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G35460 139 / 3e-38 bHLH bHLH080 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05805 141 / 6e-38 bHLH bHLH128 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G43140 138 / 2e-37 bHLH bHLH129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G24260 86 / 3e-18 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 84 / 7e-18 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 81 / 9e-17 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G34530 80 / 3e-16 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G017300 [exp] 589 / 0 AT1G51140 237 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G050500 [exp] 256 / 6e-82 AT2G42280 296 / 2e-98 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G064700 [exp] 241 / 1e-75 AT2G42280 225 / 5e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.006G057600 [exp] 235 / 2e-74 AT2G42280 278 / 3e-92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G270000 [exp] 220 / 2e-67 AT2G42280 198 / 7e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.014G150600 [exp] 160 / 2e-45 AT1G05805 265 / 1e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G231700 [exp] 149 / 5e-41 AT1G05805 274 / 6e-90 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G107500 [exp] 142 / 1e-39 AT1G35460 223 / 1e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G079900 [exp] 140 / 6e-39 AT1G35460 228 / 1e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031826 [exp] 285 / 2e-93 AT1G51140 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031255 [exp] 219 / 6e-70 AT2G42280 172 / 5e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10015704 [exp] 201 / 3e-60 AT2G42280 194 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10037484 [exp] 194 / 1e-57 AT2G42280 191 / 2e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10021023 [exp] 164 / 4e-45 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10025518 [exp] 157 / 6e-44 AT1G05805 242 / 2e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10026733 [exp] 134 / 1e-37 AT2G43140 179 / 2e-56 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10023829 [exp] 119 / 1e-29 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021846 [exp] 84 / 2e-17 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10014726 [exp] 77 / 2e-16 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G207200.3 pacid=42786347 polypeptide=Potri.003G207200.3.p locus=Potri.003G207200 ID=Potri.003G207200.3.v4.1 annot-version=v4.1 ATGGAGTCAGATCTTCAACACCAGCATCATTTTCTTCATGGTCATAACCAGCACCAACAAATTCATCAGAAACAAATGAATTCTGGGTTGACAAGATATC AGTCTGCACCAAGTTCATATTTTTCAAGTAATTTAGACAGAGACTTCTGTGAAGAGTTTCTCAATAGGCCAACAAGCCCTGAAACAGAACGAATTTTCGC GAGATTTTTAGCCAATTCCGGTGGCAATACAGAGAATATACCAGGTTCAAATCTTTGTGAGATTAAGCAAGATTCTCCAGTAAAAGAATCAGTCTCACAA ATTAACCAGCAACCCCAGATGATGGCTTCAATGAATAATCATAGTAGTGATACAAGGCTGCATCAACATCAACATCAGCAGCACCAACATGGCAATTACT CTGCCTCACAGGGTTTTTATCAAAGTCGATCAAAACCTCCATTACCAGATCATAATCCAGGTTCTGGTATGAATCATAGATCAACGAATTCAACGGGGTT GGAGAGGATGCCTTCCATGAAGCCTAGCAGTGGAAACAATCCGAATCTAGTTCGACACAGTAGCTCACCAGCAGGGCTTTTCTCCAACATAAATATTGAA TTTGAAAATGGCTATGCTGTATTGAGAGATGTGGGAGATCTTGGAGCAGGTAATAGAGACACAACTTATTCTGCAGCTGGTAGGCCACCTTCATCTTCAG GGATAAGGAGTACAATTGCTGAAATGGGAAACAAAAACATGGGAGAAAATAGCCCAGACAGTGGTGGTTTTGGTGAAACTCCTGGCAATAATTATGATTA CCCTATTGGATCATGGGATGATTCGGCTGTGATGTCTACTGGGTCAAAAAGATACCTTACAGATGATGACAGAACACTTTCTGGTCTAAATTCATCGGAA ACTCAGCAGAATGAAGAGGCAGGAAATCGCCCTCCAATGTTGGCTCATCACTTGAGCTTGCCAAAAACATCAGCAGAGATGTCTACCATTGAAAACTTTT TGCAATTTCAAGATTCTGTTCCTTGTAAGATCAGAGCCAAGCGTGGTTGTGCCACCCATCCAAGAAGCATTGCTGAGAGGGTGAGAAGAACTAGAATTAG TGAACGAATGAGGAAACTCCAGGACCTTGTACCAAACATGGACAAGCAAACAAACACATCAGACATGCTGGATTTGGCTGTTGACTACATTAAAGACCTT CAAAGACAATTCAAGGCACTTTCAGAGAATCGTGCAAGATGTACATGCTTAAAGAAGCAGCAGCCCTAG
AA sequence Show only first row Show all	>Potri.003G207200.3 pacid=42786347 polypeptide=Potri.003G207200.3.p locus=Potri.003G207200 ID=Potri.003G207200.3.v4.1 annot-version=v4.1 MESDLQHQHHFLHGHNQHQQIHQKQMNSGLTRYQSAPSSYFSSNLDRDFCEEFLNRPTSPETERIFARFLANSGGNTENIPGSNLCEIKQDSPVKESVSQ INQQPQMMASMNNHSSDTRLHQHQHQQHQHGNYSASQGFYQSRSKPPLPDHNPGSGMNHRSTNSTGLERMPSMKPSSGNNPNLVRHSSSPAGLFSNINIE FENGYAVLRDVGDLGAGNRDTTYSAAGRPPSSSGIRSTIAEMGNKNMGENSPDSGGFGETPGNNYDYPIGSWDDSAVMSTGSKRYLTDDDRTLSGLNSSE TQQNEEAGNRPPMLAHHLSLPKTSAEMSTIENFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLVPNMDKQTNTSDMLDLAVDYIKDL QRQFKALSENRARCTCLKKQQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.003G207200 [exp]	0	1
AT1G66330			senescence-associated family p...		Potri.017G129100 [exp]	1.41	0.8263
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.004G121800 [exp]	3.60	0.8285
AT5G11720			Glycosyl hydrolases family 31 ...		Potri.011G154200 [exp]	15.29	0.7144
					Potri.018G105200 [exp]	24.53	0.7429
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.017G107500 [exp]	24.85	0.7949
AT1G11700			Protein of unknown function, D...		Potri.004G015700 [exp]	24.97	0.6955
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.004G108320 [exp]	28.19	0.7860
AT5G40250			RING/U-box superfamily protein...		Potri.015G073600 [exp]	28.67	0.7466
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Potri.002G180800 [exp]	31.14	0.7300
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Potri.014G106800 [exp]	31.49	0.6910

Compare expression of checked genes

Potri.003G207200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.