Plant FIBer expression Database

Potri.003G207600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12070 545 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G017000
[exp]
771 / 0 AT4G12070 543 / 0.0 unknown protein
Potri.018G050100
[exp]
95 / 2e-20 AT4G12070 133 / 6e-33 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031257
[exp]
588 / 0 AT4G12070 548 / 0.0 unknown protein
Lus10031828
[exp]
440 / 2e-151 AT4G12070 416 / 7e-142 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G207600.1 pacid=42786573 polypeptide=Potri.003G207600.1.p locus=Potri.003G207600 ID=Potri.003G207600.1.v4.1 annot-version=v4.1
ATGACCATGGACCGAAACTCGCCACCAGAAACACCAGGCAGGGACTCAAAATCATTTCTTGTTCTCTCAATAGAATGTCTAAAAGGGACTTCGAAAGCTG
ACGAATGGAAGGTAGACATGCTTCAAACAGGAGATATAGTAGAAGAAATTCTTATCGGATCCGGGTCGTCGTCGTCATCATCATCCGGGTCTGGCGGGTT
GACAAGATATAGCGCTCCATTCAAGAATGGAAAAAGTGGGGTTCAAAAGATACTTCATAACTCGTTCAAAAACAAAGAGACTTCGATTGTTGTTCGAGTT
AGACGTGGTGGAGATGAGTTTGCTGAGTTGCATGCCTGTGTTGTGCCCGAGTCGGGTTACAAGAACAAGTATGTTTTGAGGTCTATTGCGGATCCGAATT
ATTCTGTCGGGTTCACAGATCGGTCTGAAGCCGAGTGCTTTGAATTGCAAGCTTCAAGAAGCTCCAGAATTGTTAGTGCATTACAGAGGGCTAAGCTTCA
AGATGGATATGTGGGATATCCGTGGGAAAAGAGGATGCAGGAGTTGCTAGATGTTCCCAATTCAAGCAGCTTTCTTTCTTTACTCCTCCTTCCAAAAGCT
TCAGATCCAGTTGCTTCTCGGTACAATGACTTGGAGGACACTCTTGCCAGGGCAAATGCGTGGCTGCACGCATCTCAGGCCTCTGGGGTTTCAATTGTTT
TCATGAACATTCAAACTGAATCCCTGCTTACCAAGATATCTGGAGAGACAGCTTCTTCAACTGTGAATGCTGGTTCATTGTCTGATTTGTCCAATCTTGC
TCATGTAAGCTTGTATGGTTTTGAGGATTATCATGGGGTTGATATCGGTGTAGTTAGAGCAGTTCGTCTCTGGTATGCACCTTTATGTGGAGAATTTGCA
ATTGAGGTCAAAATACAAGAAGATGATACAAAGCTCGGATTTGCCATTAGCCGCACAGAAGAGGGCTTTATCTTCATTTCCTCCGTTATGGATGGTGATG
AAAATGCACCCTCGACAAGGTCAGGGCTCAGCAATCTATACAAAGAAGCAAAAAGTGCATCAAGATTACTAGTTGTTTCAAGAGTCTCAAACGAGAAAGT
CCTTCCTTGGATGGTTTCGTCAACAGGAGCAGTCCGATGTTTTGACACTGTCTCGCTAAGCCAGAAACTTTCCTTGCATCGCCATGCCAAGGTGCCTATT
CTCATTCATGTTTTCTTGTGGGACAGAACATTGCCATTACCAAGTGCAGGCAGTGCTAGGTTTAAGTCTGTCTCCCCTCCTGTTCTTGCATTCCCACCTG
AAATTCAGCTGGCACACCACCTCAGTCAGAATCAAATACTGCCTCTGCCAGCTGATGTTCCGAATGATGCAGTGAACGAGGCCGAAGGTAGGCTTGATCG
AGACACTGCCGGAGAAGCATCATTTCGGTTCCATGATTTTTCACCTCCAAACAATTGGGTATAA
AA sequence
>Potri.003G207600.1 pacid=42786573 polypeptide=Potri.003G207600.1.p locus=Potri.003G207600 ID=Potri.003G207600.1.v4.1 annot-version=v4.1
MTMDRNSPPETPGRDSKSFLVLSIECLKGTSKADEWKVDMLQTGDIVEEILIGSGSSSSSSSGSGGLTRYSAPFKNGKSGVQKILHNSFKNKETSIVVRV
RRGGDEFAELHACVVPESGYKNKYVLRSIADPNYSVGFTDRSEAECFELQASRSSRIVSALQRAKLQDGYVGYPWEKRMQELLDVPNSSSFLSLLLLPKA
SDPVASRYNDLEDTLARANAWLHASQASGVSIVFMNIQTESLLTKISGETASSTVNAGSLSDLSNLAHVSLYGFEDYHGVDIGVVRAVRLWYAPLCGEFA
IEVKIQEDDTKLGFAISRTEEGFIFISSVMDGDENAPSTRSGLSNLYKEAKSASRLLVVSRVSNEKVLPWMVSSTGAVRCFDTVSLSQKLSLHRHAKVPI
LIHVFLWDRTLPLPSAGSARFKSVSPPVLAFPPEIQLAHHLSQNQILPLPADVPNDAVNEAEGRLDRDTAGEASFRFHDFSPPNNWV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G12070 unknown protein Potri.003G207600
[exp]
0 1
AT1G09060 Zinc finger, RING-type;Transcr... Potri.013G019000
[exp]
2.82 0.8565
AT4G30200 VEL1, VIL2 VIN3-Like 2, vernalization5/VI... Potri.006G167800
[exp]
6.48 0.7899
AT2G35050 Protein kinase superfamily pro... Potri.001G123500
[exp]
6.92 0.8529
AT4G27290 S-locus lectin protein kinase ... Potri.011G126001
[exp]
7.21 0.8217
AT2G33770 ATUBC24, UBC24,... UBIQUITIN-CONJUGATING ENZYME 2... Potri.004G043500
[exp]
7.34 0.8441
AT2G24100 ASG1 ALTERED SEED GERMINATION 1, un... Potri.005G014600
[exp]
9.79 0.8186
AT4G27190 NB-ARC domain-containing disea... Potri.019G036875
[exp]
10.48 0.8509
AT2G33580 Protein kinase superfamily pro... Potri.008G160600
[exp]
11.53 0.8350
AT1G70520 ASG6, CRK2 ALTERED SEED GERMINATION 6, cy... Potri.001G276600
[exp]
12.00 0.8304
AT2G17930 Phosphatidylinositol 3- and 4-... Potri.007G057900
[exp]
13.26 0.8518

Potri.003G207600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.