Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31980 133 / 1e-35 unknown protein AT3G47210 125 / 2e-33 Plant protein of unknown function (DUF247) (.1) AT3G47200 114 / 2e-29 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47250 114 / 3e-29 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT5G22540 110 / 7e-28 Plant protein of unknown function (DUF247) (.1) AT5G22550 107 / 1e-26 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G44710 107 / 1e-26 Plant protein of unknown function (DUF247) (.1) AT2G28580 103 / 3e-25 Plant protein of unknown function (DUF247) (.1) AT3G50170 101 / 1e-24 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G60470 101 / 2e-24 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G206101 [exp] 365 / 1e-126 AT4G31980 253 / 2e-77 unknown protein Potri.003G206201 [exp] 363 / 9e-126 AT4G31980 281 / 7e-88 unknown protein Potri.003G206301 [exp] 308 / 2e-104 AT4G31980 270 / 1e-83 unknown protein Potri.003G209000 [exp] 220 / 1e-69 AT4G31980 286 / 9e-90 unknown protein Potri.003G208700 [exp] 218 / 6e-69 AT4G31980 276 / 5e-86 unknown protein Potri.003G208750 [exp] 218 / 6e-69 AT4G31980 276 / 5e-86 unknown protein Potri.003G208600 [exp] 218 / 6e-69 AT4G31980 276 / 5e-86 unknown protein Potri.003G209832 [exp] 217 / 8e-69 AT4G31980 278 / 8e-87 unknown protein Potri.003G207900 [exp] 213 / 5e-67 AT4G31980 283 / 2e-88 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037762 [exp] 115 / 1e-29 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 114 / 2e-29 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 108 / 4e-27 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 107 / 1e-26 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10020563 [exp] 102 / 4e-26 AT3G47250 204 / 2e-62 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) Lus10038339 [exp] 102 / 6e-25 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 100 / 4e-24 AT4G31980 251 / 5e-76 unknown protein Lus10024948 [exp] 95 / 3e-22 AT4G31980 180 / 2e-49 unknown protein Lus10027719 [exp] 94 / 6e-22 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 93 / 1e-21 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.003G207750.1 pacid=42785981 polypeptide=Potri.003G207750.1.p locus=Potri.003G207750 ID=Potri.003G207750.1.v4.1 annot-version=v4.1 ATGGTGGTTGAGATTACCACCTTCATCAAAGCTCTTGGAAACCTCACAACAGTCCCAAGAAGGTCTCCAAGTCAAAAGCTCACAATACACCATGAAGTTT CACTTGATATCAACGAGTTAGCCAATTCTTTGAGGGAGCAATTGAAGATCAAGAAGGCTTTCTCCCAGGCATGCTGCATCTGCAGAGTCCCGGAACGATT GCGGAAGTTAAATGAAAAGGCATACACACCTCGAGTAGTCTCAATAGGCCCAATTCACCATGGTAAGGAAAATCTAAAAGCTATGGAAGACTACAAAATA ATGTACCTGCAGCAGTTTCTCGAACAGAATTTATTAGTAAGTGTGGAGGTTTTAATTAACATTATCAAGGAGAATGAAACGGAATTACGGGATAGTTATG CCGAAACCATTGATCTTAGTAGGAAAGACTTCGTAACAATGATCTTACTGGATGCTGTCTTCATTATTATGGTCTTACTGAACATGAAGTACTTTAGAGG GTTTTATGAAAGGAGACGTAGTGACCACATTTTCTATCGTCCATTTAAGTTAGTTGACGTAATGTTTGATATGTGCTTGCTTGAAAATCAGCTTCCATTC TTCATCCTCCAGAAGTTTTTTGAGCTATCCAGTGTAGCTGCCAATCCTGATAATTGTACCCTTATTGAGCTTACTTGTGGGTTATTAAAGTACCATGGTC TGACTGGGTAG
AA sequence Show only first row Show all	>Potri.003G207750.1 pacid=42785981 polypeptide=Potri.003G207750.1.p locus=Potri.003G207750 ID=Potri.003G207750.1.v4.1 annot-version=v4.1 MVVEITTFIKALGNLTTVPRRSPSQKLTIHHEVSLDINELANSLREQLKIKKAFSQACCICRVPERLRKLNEKAYTPRVVSIGPIHHGKENLKAMEDYKI MYLQQFLEQNLLVSVEVLINIIKENETELRDSYAETIDLSRKDFVTMILLDAVFIIMVLLNMKYFRGFYERRRSDHIFYRPFKLVDVMFDMCLLENQLPF FILQKFFELSSVAANPDNCTLIELTCGLLKYHGLTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31980			unknown protein		Potri.003G207750 [exp]	0	1
AT4G31980			unknown protein		Potri.003G206101 [exp]	2.23	0.9406
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G009900 [exp]	9.16	0.8734
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032650 [exp]	21.35	0.8957
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G112100 [exp]	21.90	0.9026
AT4G31980			unknown protein		Potri.003G206201 [exp]	25.80	0.9221
AT3G25010		AtRLP41	receptor like protein 41 (.1)		Potri.012G007901 [exp]	30.41	0.8352
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G469000 [exp]	32.68	0.8998
AT1G15125			S-adenosyl-L-methionine-depend...		Potri.017G122900 [exp]	40.62	0.8817
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Potri.007G130700 [exp]	51.84	0.8810
AT5G38780			S-adenosyl-L-methionine-depend...		Potri.017G122700 [exp]	52.47	0.8810

Compare expression of checked genes

Potri.003G207750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.