Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31980 283 / 2e-88 unknown protein AT5G11290 219 / 2e-67 Plant protein of unknown function (DUF247) (.1) AT3G50150 197 / 2e-57 Plant protein of unknown function (DUF247) (.1) AT3G50160 184 / 1e-52 Plant protein of unknown function (DUF247) (.1) AT3G50120 184 / 2e-52 Plant protein of unknown function (DUF247) (.1) AT3G50170 183 / 6e-52 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT5G22550 178 / 2e-50 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50140 176 / 2e-49 Plant protein of unknown function (DUF247) (.1) AT2G28580 172 / 7e-48 Plant protein of unknown function (DUF247) (.1) AT2G44930 168 / 1e-46 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G209000 [exp] 885 / 0 AT4G31980 286 / 9e-90 unknown protein Potri.003G207802 [exp] 749 / 0 AT4G31980 273 / 9e-85 unknown protein Potri.003G208700 [exp] 736 / 0 AT4G31980 276 / 5e-86 unknown protein Potri.003G208750 [exp] 736 / 0 AT4G31980 276 / 5e-86 unknown protein Potri.003G208600 [exp] 736 / 0 AT4G31980 276 / 5e-86 unknown protein Potri.003G209832 [exp] 699 / 0 AT4G31980 278 / 8e-87 unknown protein Potri.003G209300 [exp] 613 / 0 AT4G31980 211 / 4e-62 unknown protein Potri.003G208400 [exp] 524 / 0 AT5G11290 182 / 3e-55 Plant protein of unknown function (DUF247) (.1) Potri.003G208100 [exp] 504 / 5e-180 AT4G31980 170 / 3e-48 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039777 [exp] 211 / 3e-63 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 210 / 1e-62 AT4G31980 251 / 5e-76 unknown protein Lus10009871 [exp] 209 / 1e-62 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 200 / 7e-59 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 198 / 2e-58 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 195 / 4e-57 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10006802 [exp] 179 / 7e-51 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 176 / 3e-49 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 168 / 5e-47 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 167 / 1e-46 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.003G207900.4 pacid=42787352 polypeptide=Potri.003G207900.4.p locus=Potri.003G207900 ID=Potri.003G207900.4.v4.1 annot-version=v4.1 ATGGAATCTGGTCGACCATCAAGTACTAATCATGAGCTGAGTCATCAAGTTTCGCTTGATATTGATAGATTAGCCCAATCCGTGACGGAAGAGCTGGAAA TCTCAAATCCTTTCTCCGACACATGCTGTATATATAAAGTTCCTGAGCGATTACGCGAGCTGAACGAAAAGGCCTACACACCTCGATTAGTCTCCATAGG CCCAATTCACCATTGTAATGACACGCTAAAAGCCATGGAAGACCACAAAAGAATGTACCTGAAAGAATTCATTGCCCGGACCAAGGTAAGTGTGAAGGGT TTTATTGAATTGATCAAGGCGAAGGAAACAAGATTGCGTAATTGCTATGCGGAGACAAATGGGTTTAGTAGCGAATACTTCATAAAAATGATATTAATGG ATGCTGCCTTCGTCATTATGTTTTTGCTGAAGTGGACTTACACAGACTTCAGAGGAAGCAGAGACAGCATTTTCTATCCTCCATACAAGAGTGTAGATGT AAGGGTTGATATCTGTTTGCTTGAAAATCAGCTCCCGTTCTTCATCCTCGAGGAGTTGTGTGGACTATCCCCTATATTCGGCAATTCTCCAAAAGCTACA CTGATTGGGCTTACTCATTGGTTCTTTTCATATGAATGGGGTTCATGGGCAGTAGGGGAATATTTGGGGAGAGTAGATTTCTCCGAAGTGAAACATTTGG TTGACTTTCTTACAATTTATCATCGGCCAACTGAACAGCAACAGTATGAGGAACTTGAGGTTCTAACCGCACCCAGTGTAAAGGAGCTCCACCAAGCGGG GGTCAAGTTTGTGCTGAGTTCAAGCAAACATCTTCTTGACATAAAATTCGATAGAAATAAAGGGAGACTAGAGTTCCCACGATTACAGTTAGATGACAGA ACAGAAATCATAATCAGGAATATGCAAGCCTTTGAGCAGTGCCATGGCCTGAAACATGGTTATGTTGGTGACTATATCTTCTTGATGGGTCTCTTTGTCA GTGCCAGTAAGGATGTGGAAATGCTTGTTGAAAATCGTATTATAGAAAACTGGCTACCGTCTAATGAGGAAGTGGTACAACTCTTTTACAATCTCAACAA ACAAAATAGTGTGTGGTCAGGTTCTTTTCTCTTTAAAGGTCTCATTAAAGATCTGACTGCATTCTGCGAAAGGCCATGGAACAAATGGAAGGCAAATTTA AAGCAAAATTATTTCAATACCCCATGGGCAGCAGTCTCTGTCTCAGGAGCTGTTATTCTTCTCATTCTGACTGTCATACAATCCGTCTGCTCTATACTTC AAGTATGGTTTAGCTTCTGCAATTTCAATTCTTTCATATGA
AA sequence Show only first row Show all	>Potri.003G207900.4 pacid=42787352 polypeptide=Potri.003G207900.4.p locus=Potri.003G207900 ID=Potri.003G207900.4.v4.1 annot-version=v4.1 MESGRPSSTNHELSHQVSLDIDRLAQSVTEELEISNPFSDTCCIYKVPERLRELNEKAYTPRLVSIGPIHHCNDTLKAMEDHKRMYLKEFIARTKVSVKG FIELIKAKETRLRNCYAETNGFSSEYFIKMILMDAAFVIMFLLKWTYTDFRGSRDSIFYPPYKSVDVRVDICLLENQLPFFILEELCGLSPIFGNSPKAT LIGLTHWFFSYEWGSWAVGEYLGRVDFSEVKHLVDFLTIYHRPTEQQQYEELEVLTAPSVKELHQAGVKFVLSSSKHLLDIKFDRNKGRLEFPRLQLDDR TEIIIRNMQAFEQCHGLKHGYVGDYIFLMGLFVSASKDVEMLVENRIIENWLPSNEEVVQLFYNLNKQNSVWSGSFLFKGLIKDLTAFCERPWNKWKANL KQNYFNTPWAAVSVSGAVILLILTVIQSVCSILQVWFSFCNFNSFI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31980			unknown protein		Potri.003G207900 [exp]	0	1
AT1G69550			disease resistance protein (TI...		Potri.005G030365 [exp]	2.44	0.9534
AT5G27550			P-loop containing nucleoside t...		Potri.005G030271 [exp]	3.46	0.9382
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072100 [exp]	6.00	0.9429
AT1G71870			MATE efflux family protein (.1...		Potri.019G086100 [exp]	8.12	0.9246
AT1G62760			Plant invertase/pectin methyle...		Potri.003G113600 [exp]	15.00	0.9259
AT1G03670			ankyrin repeat family protein ...		Potri.013G134466 [exp]	17.94	0.9222
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Potri.010G174500 [exp]	19.79	0.8750
AT3G14470			NB-ARC domain-containing disea...		Potri.015G121800 [exp]	20.78	0.8983	FRGA-A30.27
AT5G19090			Heavy metal transport/detoxifi...		Potri.014G140600 [exp]	20.97	0.9313
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G117050 [exp]	22.13	0.9288

Compare expression of checked genes

Potri.003G207900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.