Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31980 170 / 4e-48 unknown protein AT5G22550 128 / 8e-34 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT5G22540 124 / 2e-32 Plant protein of unknown function (DUF247) (.1) AT3G50180 124 / 7e-32 Plant protein of unknown function (DUF247) (.1) AT3G50130 119 / 5e-30 Plant protein of unknown function (DUF247) (.1) AT3G50150 116 / 3e-29 Plant protein of unknown function (DUF247) (.1) AT3G50140 115 / 8e-29 Plant protein of unknown function (DUF247) (.1) AT5G11290 112 / 9e-29 Plant protein of unknown function (DUF247) (.1) AT3G47250 112 / 8e-28 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G47210 112 / 8e-28 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G207900 [exp] 504 / 2e-180 AT4G31980 283 / 2e-88 unknown protein Potri.003G209000 [exp] 500 / 9e-179 AT4G31980 286 / 9e-90 unknown protein Potri.003G207802 [exp] 485 / 2e-173 AT4G31980 273 / 9e-85 unknown protein Potri.003G208700 [exp] 473 / 3e-168 AT4G31980 276 / 5e-86 unknown protein Potri.003G208750 [exp] 473 / 5e-168 AT4G31980 276 / 5e-86 unknown protein Potri.003G208600 [exp] 473 / 5e-168 AT4G31980 276 / 5e-86 unknown protein Potri.003G209300 [exp] 468 / 3e-167 AT4G31980 211 / 4e-62 unknown protein Potri.003G209832 [exp] 462 / 3e-164 AT4G31980 278 / 8e-87 unknown protein Potri.003G208400 [exp] 279 / 6e-94 AT5G11290 182 / 3e-55 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037762 [exp] 136 / 7e-37 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 126 / 3e-33 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 115 / 7e-29 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 106 / 4e-26 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 106 / 8e-26 AT4G31980 251 / 5e-76 unknown protein Lus10039780 [exp] 105 / 1e-25 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10020563 [exp] 100 / 1e-24 AT3G47250 204 / 2e-62 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) Lus10010065 [exp] 102 / 2e-24 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 100 / 2e-23 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 96 / 4e-22 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.003G208100.3 pacid=42785375 polypeptide=Potri.003G208100.3.p locus=Potri.003G208100 ID=Potri.003G208100.3.v4.1 annot-version=v4.1 ATGGAATCTGGTATTGATAGATTAATCCAATCCGTGAAGGAAGAGCTGCAAATCTCATATGCTTTCTCCGACAGATGTTGTATATATAAAGTTCCTGAGC GATTACGCGAGCTGAACGAAAAGGCCTACACACCTCGATTAGTCTCCATAGGCCCAATTCACCATTGTAATGACAAGCTAAAAGCCATGGAAGACCACAA AAGAATGTACCTGCAAGAATTCATTGCCCGGACCAAGGTAAGTGTGGAGGGTTTTATTGAATTGATCAAGGAGAAGGAAACAAGATTGCGTAATTGCTAT GAGGAAACCAATTGGTTTAGTAGCGAAAACTTCATAAAAATGATATTAATGGATGCTGTCTTCGTCATTATGTTTTTGCTGAAGTACAATTGCAGGAAGT CCACAGAATTCAGAGGTAGCAGAGACAGCATTTTCTATCCTCCATACAAGTGGTTTGATGTAAGGGTTGATATCTGTTTGCTTGAAAATCAGCTCCCGTT CTTCATCCTCGAGGAGTTGTGTGGACTATCCACTATACTCGGCAATTCTCCGAAACCTACACTGATTGAGCTTACTCATTGGTTCTTTTCAAATGAATGG GGTTCATGGGCAGTAGGGGAATATTGGGGGAAAATAGATTTCTCCGAAGTGAAACATTTGGTTGACTTTCTTACAATTTATCATCGGCCAACTGAACAGC AACAGCATGAGGAACTTGAGGTTCTAACCGCACCCAGTGTAAAGGAGCTCCACCAAGCAGGGGTCAAGTTTGTGCTGAGCTCAAGCAAAAATCTTCTTGA CATAAAATTCGATAGAAATAAAGGGAGACTAGAATTTCCACGATTACAGTTAGAAGACGGAACATAA
AA sequence Show only first row Show all	>Potri.003G208100.3 pacid=42785375 polypeptide=Potri.003G208100.3.p locus=Potri.003G208100 ID=Potri.003G208100.3.v4.1 annot-version=v4.1 MESGIDRLIQSVKEELQISYAFSDRCCIYKVPERLRELNEKAYTPRLVSIGPIHHCNDKLKAMEDHKRMYLQEFIARTKVSVEGFIELIKEKETRLRNCY EETNWFSSENFIKMILMDAVFVIMFLLKYNCRKSTEFRGSRDSIFYPPYKWFDVRVDICLLENQLPFFILEELCGLSTILGNSPKPTLIELTHWFFSNEW GSWAVGEYWGKIDFSEVKHLVDFLTIYHRPTEQQQHEELEVLTAPSVKELHQAGVKFVLSSSKNLLDIKFDRNKGRLEFPRLQLEDGT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31980			unknown protein		Potri.003G208100 [exp]	0	1
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.001G097901 [exp]	4.47	0.8968
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041900 [exp]	6.32	0.8898
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.004G185000 [exp]	9.48	0.8582
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.014G020432 [exp]	12.64	0.8575
AT4G34880			Amidase family protein (.1)		Potri.004G171300 [exp]	13.74	0.8813
AT5G15780			Pollen Ole e 1 allergen and ex...		Potri.017G100600 [exp]	15.87	0.8155
AT1G03670			ankyrin repeat family protein ...		Potri.013G134466 [exp]	18.16	0.8899
AT1G65810			P-loop containing nucleoside t...		Potri.004G077500 [exp]	18.73	0.8717
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G094100 [exp]	21.44	0.8392
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G009900 [exp]	28.14	0.8403

Compare expression of checked genes

Potri.003G208100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.