Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31980 277 / 2e-86 unknown protein AT5G11290 231 / 4e-72 Plant protein of unknown function (DUF247) (.1) AT3G50150 204 / 4e-60 Plant protein of unknown function (DUF247) (.1) AT3G50160 197 / 2e-57 Plant protein of unknown function (DUF247) (.1) AT3G50120 189 / 2e-54 Plant protein of unknown function (DUF247) (.1) AT3G50170 188 / 7e-54 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50140 175 / 3e-49 Plant protein of unknown function (DUF247) (.1) AT2G28580 173 / 2e-48 Plant protein of unknown function (DUF247) (.1) AT5G22550 171 / 4e-48 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47250 170 / 9e-48 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G208750 [exp] 880 / 0 AT4G31980 276 / 5e-86 unknown protein Potri.003G208700 [exp] 878 / 0 AT4G31980 276 / 5e-86 unknown protein Potri.003G209000 [exp] 739 / 0 AT4G31980 286 / 9e-90 unknown protein Potri.003G207900 [exp] 737 / 0 AT4G31980 283 / 2e-88 unknown protein Potri.003G207802 [exp] 694 / 0 AT4G31980 273 / 9e-85 unknown protein Potri.003G209832 [exp] 679 / 0 AT4G31980 278 / 8e-87 unknown protein Potri.003G209300 [exp] 595 / 0 AT4G31980 211 / 4e-62 unknown protein Potri.003G208400 [exp] 587 / 0 AT5G11290 182 / 3e-55 Plant protein of unknown function (DUF247) (.1) Potri.003G208100 [exp] 474 / 2e-168 AT4G31980 170 / 3e-48 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038338 [exp] 222 / 2e-67 AT4G31980 251 / 5e-76 unknown protein Lus10039777 [exp] 218 / 2e-66 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 209 / 2e-62 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 206 / 1e-61 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 205 / 4e-61 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 202 / 5e-60 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 173 / 5e-49 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 172 / 1e-48 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10006802 [exp] 172 / 1e-48 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 171 / 1e-47 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.003G208600.1 pacid=42787023 polypeptide=Potri.003G208600.1.p locus=Potri.003G208600 ID=Potri.003G208600.1.v4.1 annot-version=v4.1 ATGGAAACTGTTGGAACATCAAGCACTGATGATGAGCCGAGTCGACATCAAGTTTCGCTAGATATCGAGACATTAGCCAAATCTGTGAAGGCCGAGCTGG AAATCTCATATGCTTTCTCCGACACATGTTGTATATATAAAGTTCCGGAGCAATTGCGCGAGGTGAACGAAAAGGCCTACACACCTCGATTGGTCTCCAT AGGCCCAATTCACCATGCTAAAGAGAAGCTAAAAGCCATGGAAGACCACAAAAGAATGTATCTGAAAGAATTCCTTGCCCGGAGCGAGGTAAGTGTAGAG GGTTTTATTGAATTTATTAAGGAGAACGAAACAAGATTGCGTAATTGCTATGCGGAAACCATTGAGTTTAATAGCGAATACTTCATAAAAATGATATTAA TGGATGCTGCCTTCGTCATTATGTTTTTGCTGAAGTGCAAAAACAAAGACTTCAGCGGTAGCAGAGACAGCATTTTCTATCCTCCACACAAGAGTGTAGA TGTAAGGGTTGATATCTGTTTGCTTGAAAATCAGCTCCCGTTCTTCATCCTCGAGGAGTTGTGTGGACTATCCACTATACTCGGCAATTCTCCGAAACCT ACACTGATTGAGCTTACTCATGGGTTCTTTTCAAAAGAATGGGGTTCATGGGCAGTAGGGGAATATTGGGGGAAAATAGATTTCTCCGAAGTGAAACATT TGGTTGACTTTCTTACAATTTATCAACAGCCACCTCAACAGCAGCAGAATGAGGAACTTGAGGTTCTAACCGCACCCAGTGTAAAGGAGCTCCACCAAGC GGGGGTCAAGTTTGTGTTGAGTTCAAGCAAAAATCTTCTTGACATAAAATTCGATAGAAATAAAGGGAGACTGGAAATTCCACGATTACAGTTAGATGAC AGTACAGAAATCATAATCAGGAATATGCAAGCCTTTGAGCAGTGCCATGGCCTGTATGGTTATGTTGGTGACTATATCTTCTTGATGGGTCTCTTTGTCA GTGCCAGTAAGGATGTGGAAATGCTTGTTGAAAATCGTATTATAGAAAACTGGCTACCGTCTAATGAGGAAGTGGTACAACTCTTTTACAATCTCAACAA ACAAAATAGTGTGCGGGGACGTTTTTTTCTCTTCAAAGGTCTCATTAAAGATCTGAATGCATTCTGCGAAAAGCCATGGAACAAGTGGAAGGCAAATTTA AAGCAAAATTATTTCAATACCCCATGGGCAGCAATCTCTGTCTCAGGAGCTGTTATTCTTCTCATTCTGACTGTCCTACAGTCCGTCTGCTCTATACTCC AAGTAGGTTAG
AA sequence Show only first row Show all	>Potri.003G208600.1 pacid=42787023 polypeptide=Potri.003G208600.1.p locus=Potri.003G208600 ID=Potri.003G208600.1.v4.1 annot-version=v4.1 METVGTSSTDDEPSRHQVSLDIETLAKSVKAELEISYAFSDTCCIYKVPEQLREVNEKAYTPRLVSIGPIHHAKEKLKAMEDHKRMYLKEFLARSEVSVE GFIEFIKENETRLRNCYAETIEFNSEYFIKMILMDAAFVIMFLLKCKNKDFSGSRDSIFYPPHKSVDVRVDICLLENQLPFFILEELCGLSTILGNSPKP TLIELTHGFFSKEWGSWAVGEYWGKIDFSEVKHLVDFLTIYQQPPQQQQNEELEVLTAPSVKELHQAGVKFVLSSSKNLLDIKFDRNKGRLEIPRLQLDD STEIIIRNMQAFEQCHGLYGYVGDYIFLMGLFVSASKDVEMLVENRIIENWLPSNEEVVQLFYNLNKQNSVRGRFFLFKGLIKDLNAFCEKPWNKWKANL KQNYFNTPWAAISVSGAVILLILTVLQSVCSILQVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31980			unknown protein		Potri.003G208600 [exp]	0	1
AT1G53440			Leucine-rich repeat transmembr...		Potri.006G014232 [exp]	1.00	0.9361
AT3G14470			NB-ARC domain-containing disea...		Potri.015G121800 [exp]	1.41	0.9224	FRGA-A30.27
AT4G31980			unknown protein		Potri.003G207802 [exp]	5.00	0.8641
AT3G18670			Ankyrin repeat family protein ...		Potri.015G119800 [exp]	6.24	0.8796
AT4G31980			unknown protein		Potri.003G208750 [exp]	8.94	0.8758
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219600 [exp]	10.24	0.8183
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G009900 [exp]	10.95	0.8526
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G011200 [exp]	12.00	0.8378
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.016G092600 [exp]	12.12	0.8573
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120000 [exp]	14.28	0.8605

Compare expression of checked genes

Potri.003G208600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.