Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31980 286 / 7e-90 unknown protein AT5G11290 221 / 2e-68 Plant protein of unknown function (DUF247) (.1) AT3G50150 206 / 6e-61 Plant protein of unknown function (DUF247) (.1) AT3G50160 196 / 4e-57 Plant protein of unknown function (DUF247) (.1) AT3G50170 192 / 2e-55 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50120 190 / 7e-55 Plant protein of unknown function (DUF247) (.1) AT5G22550 184 / 9e-53 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50140 184 / 3e-52 Plant protein of unknown function (DUF247) (.1) AT2G44930 174 / 8e-49 Plant protein of unknown function (DUF247) (.1) AT5G22540 171 / 3e-48 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G207900 [exp] 887 / 0 AT4G31980 283 / 2e-88 unknown protein Potri.003G207802 [exp] 756 / 0 AT4G31980 273 / 9e-85 unknown protein Potri.003G208700 [exp] 742 / 0 AT4G31980 276 / 5e-86 unknown protein Potri.003G208750 [exp] 742 / 0 AT4G31980 276 / 5e-86 unknown protein Potri.003G208600 [exp] 742 / 0 AT4G31980 276 / 5e-86 unknown protein Potri.003G209832 [exp] 707 / 0 AT4G31980 278 / 8e-87 unknown protein Potri.003G209300 [exp] 614 / 0 AT4G31980 211 / 4e-62 unknown protein Potri.003G208400 [exp] 523 / 0 AT5G11290 182 / 3e-55 Plant protein of unknown function (DUF247) (.1) Potri.003G208100 [exp] 501 / 4e-179 AT4G31980 170 / 3e-48 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039777 [exp] 216 / 2e-65 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 216 / 3e-65 AT4G31980 251 / 5e-76 unknown protein Lus10009871 [exp] 215 / 6e-65 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 205 / 5e-61 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 201 / 1e-59 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 198 / 3e-58 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 184 / 1e-52 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10006802 [exp] 180 / 2e-51 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 175 / 2e-49 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 174 / 3e-49 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.003G209000.1 pacid=42785262 polypeptide=Potri.003G209000.1.p locus=Potri.003G209000 ID=Potri.003G209000.1.v4.1 annot-version=v4.1 ATGGAATCTGGTCGACCATCAAGTACTAATCATGAGCTGAGTCATCAAGTTTCGCTTGATATTGATAGATTAGCCCAATCCGTGACGGAAGAGCTGGAAA TCTCAAATCCTTTCTCCGACACATGCTGTATATATAAAGTTCCTGAGCGATTACGCGAGCTGAACGAAAAGGCCTACACACCTCGATTAGTCTCCATAGG CCCAATTCACCATGGTAATGACAAGCTAAAAGCCATGGAAGACCACAAAAGAATGTACCTGAAAGAATTCATTGCCCGGACCAAGGTAAGTGTGAAGGGT TTTATTGAATTGATCAAGGAGAAGGAAACAAGATTGCGTAATTGCTATGCGGAGACCAATGGGTTTAGTAGCGAATACTTCATAAAAATGATATTAATGG ATGCTGCCTTCGTCATTATGTTATTGCTGAAGTGGACTTACACAGACTTCAGAGGAAGCAGAGACAGCATTTTCTATCCTCCATACAAGAGTGTAGATGT AAGGGTTGATATCTGTTTGCTTGAAAATCAGCTCCCGTTCTTCATCCTCGAGGAGTTGTGTGGACTATCCCCTATATTCGGCAATTCTCCAAAAGCTACA CTGATTGGGCTTACTCATTGGTTCTTTTCATATGAATGGGGTTCATGGGCAGTAGGGGAATATTTGGGGGGAGTAGATTTCTCCGAAGTGAAACATTTGG TTGACTTTCTTACAATTTATCATCGGCCAACTGAACAGCAACAGTATGAGGAACTTGAGGTTCTAACCGCCCCCAGTGTAAAGGAGCTCCACCAAGCGGG GGTCAAGTTTGTGTTGAGTTCAAGCAAACATCTTCTTGACATAAAATTCGATAGAAATAAAGGGAGACTAGAGTTCCCACGATTACAGTTAGATGACAGA ACAGAAATCATAATCAGGAATATGCAAGCCTTTGAGCAGTGCCATGGCCTGACACATGGTTATGTTGGTGACTATATCTTCTTGATGGGTCTCTTTGTCA GTGCCAGTAAGGATGTGGAAATGCTTGTTGAAAATCGTATTATAGAAAACTGGCTACCGTCTAACGAGGAAGTGGTACAACTCTTTTACAATCTCAACAA ACAAAATAGTGTGTGGTCAGGTACTTTTCTCTTTAAAGGTCTCATTAAAGATCTGAATGCATTCTGCGAAAGGCCATGGAACAAATGGAAGGCAAATTTA AAGCAAAATTATTTCAATACCCCATGGGCAGCAGTCTCTGTCTCAGGAGCTGTTATTCTTCTCATTCTGACTGTCATACAATCCGTCTGCTCTATACTTC AAGTAGTTTAG
AA sequence Show only first row Show all	>Potri.003G209000.1 pacid=42785262 polypeptide=Potri.003G209000.1.p locus=Potri.003G209000 ID=Potri.003G209000.1.v4.1 annot-version=v4.1 MESGRPSSTNHELSHQVSLDIDRLAQSVTEELEISNPFSDTCCIYKVPERLRELNEKAYTPRLVSIGPIHHGNDKLKAMEDHKRMYLKEFIARTKVSVKG FIELIKEKETRLRNCYAETNGFSSEYFIKMILMDAAFVIMLLLKWTYTDFRGSRDSIFYPPYKSVDVRVDICLLENQLPFFILEELCGLSPIFGNSPKAT LIGLTHWFFSYEWGSWAVGEYLGGVDFSEVKHLVDFLTIYHRPTEQQQYEELEVLTAPSVKELHQAGVKFVLSSSKHLLDIKFDRNKGRLEFPRLQLDDR TEIIIRNMQAFEQCHGLTHGYVGDYIFLMGLFVSASKDVEMLVENRIIENWLPSNEEVVQLFYNLNKQNSVWSGTFLFKGLIKDLNAFCERPWNKWKANL KQNYFNTPWAAVSVSGAVILLILTVIQSVCSILQVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31980			unknown protein		Potri.003G209000 [exp]	0	1
AT4G31980			unknown protein		Potri.003G207802 [exp]	1.41	0.8889
AT4G31980			unknown protein		Potri.003G208300 [exp]	2.44	0.8844
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.013G066700 [exp]	2.44	0.8674
AT3G12970			unknown protein		Potri.005G098300 [exp]	2.82	0.8726
AT3G14470			NB-ARC domain-containing disea...		Potri.006G271800 [exp]	5.74	0.8796
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112600 [exp]	6.32	0.8637
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.018G087100 [exp]	8.06	0.8499
AT2G39490			F-box family protein (.1)		Potri.008G050800 [exp]	8.24	0.8412
AT5G06740			Concanavalin A-like lectin pro...		Potri.011G146500 [exp]	8.36	0.8643
AT5G27550			P-loop containing nucleoside t...		Potri.005G031500 [exp]	8.94	0.8580

Compare expression of checked genes

Potri.003G209000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.