Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12900 603 / 0 unknown protein AT1G12330 250 / 5e-75 unknown protein AT2G45260 74 / 7e-14 Plant protein of unknown function (DUF641) (.1) AT3G60680 67 / 3e-11 Plant protein of unknown function (DUF641) (.1) AT5G58960 63 / 5e-10 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G14870 57 / 2e-08 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G53380 51 / 2e-06 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G016600 [exp] 993 / 0 AT5G12900 555 / 0.0 unknown protein Potri.003G115700 [exp] 278 / 6e-86 AT1G12330 503 / 2e-175 unknown protein Potri.001G117000 [exp] 274 / 3e-84 AT1G12330 465 / 1e-160 unknown protein Potri.002G145900 [exp] 65 / 1e-10 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.001G387700 [exp] 59 / 5e-09 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.009G041000 [exp] 58 / 1e-08 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.014G067600 [exp] 56 / 4e-08 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 54 / 2e-07 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.002G145000 [exp] 54 / 2e-07 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031249 [exp] 533 / 0 AT5G12900 448 / 1e-151 unknown protein Lus10031820 [exp] 522 / 5e-179 AT5G12900 454 / 2e-154 unknown protein Lus10024559 [exp] 246 / 9e-74 AT1G12330 479 / 3e-166 unknown protein Lus10032197 [exp] 242 / 4e-72 AT1G12330 476 / 2e-165 unknown protein Lus10004335 [exp] 220 / 5e-64 AT1G12330 468 / 7e-162 unknown protein Lus10028918 [exp] 213 / 5e-63 AT1G12330 399 / 3e-137 unknown protein Lus10001989 [exp] 65 / 7e-11 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10030291 [exp] 60 / 4e-09 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10016444 [exp] 59 / 7e-09 AT5G58960 635 / 0.0 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Lus10009284 [exp] 58 / 2e-08 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G210200.2 pacid=42786499 polypeptide=Potri.003G210200.2.p locus=Potri.003G210200 ID=Potri.003G210200.2.v4.1 annot-version=v4.1 ATGCCATGCCTACTTAGAGTAAAAACCACTACAACATCCCATATCTCTAGCTTCTTCACATGCTCACATTCTATTTTGAACAAAGACAAAAGCACCTTGG ATTTTGGATGCCTTCCCTCCTCTATCTCTCCTGCTATATTTCTGGTTCTAACTTCATTAGGTACAATATCATCTGCATATCTGAAATCAAATCCAACCAT TAGACACTCAGTTCTGAAATCCCATTCTGTTCCCTGTCTATCTTCACAGAATTGGTCGAATTTTGTTCTTTTCTTTGGCTTATATGCTCTGTTTTTCATG GCTGCTGCTGCTGTTCAAAGCTTACAAAACCATGACAACACCAACCAGGAAGTTGGTAGACAAGAAATACAAGCAGCCATTGCTAAAGCAGTGGAGCTTA GAGCTTTACATGCTGCTTTAATGCTAGGAAACAGCCCCGCCAATCTCAGACTCCCATCTTCTTCCCCTGTTTCACGCTCTGTTCCGTACTTCTCCGCTCA AGATTACCCTGTTTTTACTCCTAGTTATGAAGATGAACCGTTACCAGGACATCATCAGATTCTGACAAAATCAAGAACACTATCAGGAAGTTGGGATGAG TTTGGCCTAGAGGCAGGAAGTGGCCTTGAAAGTGTTTTATCAGATTATAAGAAGGAGGATTCGTCTTCAAGGAAAGGAATTCCTTCTGGTATGTCCAATT TGGAGTCAAATATTTGTCCAGCTGAAGATCTAAAATCTGTCACTAGTTCTTCTGCAAACAACATCACAGTGCTTCGCGCATCGCCTGGAGCAGAATGCCA CAAGTCTTGTAGGAGAAATAGCCTGGGAGACTTCAAAACCATATCATCATGCAATAGATGCAAGCCGGCTACCATAACTACCGAGTCTGAAAAGGTTACC AGGAATAGTAAGCATTCTAATATTGTTGTGCCATTGACAGATTCTCACTCATCCCTTCAATCACAACCGAAAAATCGAGGGGTGATGTCATGGTTGTTTC CTAAGTTAAAGAAGAAGCATAAGAATGAGAGTTCGCCAAACCGAACAGAATCTGAGGAAGTCTCACAGATTTTAAAGGACTTGGGGATGTTGTCAATTGA AACATTGAAGAGAGAATTGATGGAAGCAAACGAGCATAGAGATGCAGCTTTAATGGAGGTTGCTGAGATGAAATCTTCTTTGGGGGACTTAAGACACAAG CTCGAGTACTTGGAGAGTTACTGTGAAGAGTTAAAGAAAGCTTTAAGGCAGTCAACACTAGCAAAGGACTCACTAGTTGTCGAAAAGCTGGGAAACTTTC CGAATAGAGGGAAATCCACTGATGGAAATGGAGAAAACTTGATGCCAGTAAGTGAAGATGCAATGGTGGAAGGTTTCTTGCAGATAGTATCGGAAGCAAG ACTTTCGGTGAAGCAGTTCTGCAAGACACTGGTAGGACAGATTGAGGAAACTGATAGTACTCTCATGGACAACCTGAACTTGCTTCTTCAACCACACAAA CTGTCTCTAAACTCCCGGTACTCAAAGGCAGTATTATACCATTTGGAAGCCGTTATTAACCAATCACTCTACCAAGATTTCGAGAACTCTGTTTTCCAAA AGAATGGTTCGCCAAAGAATCTAGACCCAAACCAAGATCGCCAAGCACAGTTTTCGTCATTCGTTGCGCTGAGAAACCTAAGTTGGAGTGAGGTTTTAAG GAAAGGGACAAAGTATTACAGTGAAGAGTTTAGCAAGTTCTGTGATCAGAAGATGAGTAGTATTATTACAACAATGAATTGGACTCGGCCATGGCCTGAA CAACTTCTTCAAGCATTTTTTGTTGCTGCTAAATGCATATGGTTGCTTCATTTGCTTGCCTTTTCATTCAATCCGCCACTGGGAATTTTAAGGGTTGAAG AGAATAGAAGCTTTGATTCACATTTCATGGAGGATATGTTCACGGACAGACAAAGATCACTCGGTCCGAGCCGGGTTAAGATCATGGTGATGCCAGGGTT TTATGTCCAGGACAGGGTTCTAAGATGTAAGGTTCTTTGCAGGCACAAGTCTGTACCTTGA
AA sequence Show only first row Show all	>Potri.003G210200.2 pacid=42786499 polypeptide=Potri.003G210200.2.p locus=Potri.003G210200 ID=Potri.003G210200.2.v4.1 annot-version=v4.1 MPCLLRVKTTTTSHISSFFTCSHSILNKDKSTLDFGCLPSSISPAIFLVLTSLGTISSAYLKSNPTIRHSVLKSHSVPCLSSQNWSNFVLFFGLYALFFM AAAAVQSLQNHDNTNQEVGRQEIQAAIAKAVELRALHAALMLGNSPANLRLPSSSPVSRSVPYFSAQDYPVFTPSYEDEPLPGHHQILTKSRTLSGSWDE FGLEAGSGLESVLSDYKKEDSSSRKGIPSGMSNLESNICPAEDLKSVTSSSANNITVLRASPGAECHKSCRRNSLGDFKTISSCNRCKPATITTESEKVT RNSKHSNIVVPLTDSHSSLQSQPKNRGVMSWLFPKLKKKHKNESSPNRTESEEVSQILKDLGMLSIETLKRELMEANEHRDAALMEVAEMKSSLGDLRHK LEYLESYCEELKKALRQSTLAKDSLVVEKLGNFPNRGKSTDGNGENLMPVSEDAMVEGFLQIVSEARLSVKQFCKTLVGQIEETDSTLMDNLNLLLQPHK LSLNSRYSKAVLYHLEAVINQSLYQDFENSVFQKNGSPKNLDPNQDRQAQFSSFVALRNLSWSEVLRKGTKYYSEEFSKFCDQKMSSIITTMNWTRPWPE QLLQAFFVAAKCIWLLHLLAFSFNPPLGILRVEENRSFDSHFMEDMFTDRQRSLGPSRVKIMVMPGFYVQDRVLRCKVLCRHKSVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12900			unknown protein		Potri.003G210200 [exp]	0	1
AT1G22610			C2 calcium/lipid-binding plant...		Potri.019G080000 [exp]	13.85	0.6830
AT1G21340	DOF	AtDof1,2	Dof-type zinc finger DNA-bindi...		Potri.002G070700 [exp]	26.15	0.7311
					Potri.002G055566 [exp]	142.91	0.6775
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Potri.017G059100 [exp]	151.83	0.6542

Compare expression of checked genes

Potri.003G210200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.