Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12890 525 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT4G34131 248 / 2e-76 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT2G15490 247 / 3e-76 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G15480 240 / 2e-73 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT3G53160 239 / 6e-73 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT2G36770 238 / 2e-72 UDP-Glycosyltransferase superfamily protein (.1) AT4G34138 236 / 7e-72 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G36780 235 / 2e-71 UDP-Glycosyltransferase superfamily protein (.1) AT4G34135 233 / 5e-71 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT2G36800 226 / 7e-68 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G016500 [exp] 800 / 0 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G016300 [exp] 657 / 0 AT5G12890 543 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077400 [exp] 461 / 3e-159 AT5G12890 381 / 1e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077800 [exp] 461 / 4e-159 AT5G12890 387 / 3e-130 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077500 [exp] 460 / 8e-159 AT5G12890 389 / 9e-131 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077700 [exp] 411 / 2e-140 AT5G12890 332 / 1e-109 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G098966 [exp] 265 / 6e-83 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 264 / 2e-82 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G302400 [exp] 262 / 6e-82 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031248 [exp] 541 / 0 AT5G12890 512 / 2e-179 UDP-Glycosyltransferase superfamily protein (.1) Lus10031819 [exp] 538 / 0 AT5G12890 506 / 4e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10025513 [exp] 405 / 4e-137 AT5G12890 348 / 9e-115 UDP-Glycosyltransferase superfamily protein (.1) Lus10014079 [exp] 243 / 1e-74 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10019832 [exp] 239 / 4e-73 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10034650 [exp] 236 / 9e-72 AT1G73880 484 / 6e-169 UDP-glucosyl transferase 89B1 (.1) Lus10014086 [exp] 235 / 2e-71 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10003322 [exp] 234 / 7e-71 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10014082 [exp] 233 / 7e-71 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014084 [exp] 231 / 3e-70 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.003G210400.1 pacid=42785636 polypeptide=Potri.003G210400.1.p locus=Potri.003G210400 ID=Potri.003G210400.1.v4.1 annot-version=v4.1 ATGTCACAGAGGAAAGAGAGTATAGTGATGCTCCCATTCATGGCACAAGGCCATATCATACCTTTCTTAGCATTAGCCCTTCAACTAGATCAAACGAAGA AGTATACCATAACCTTTGTGAACACTTCTCTTAACATCAAGAAACTAAGACCATCAATCCCTACAAACTCTTCCATTCACCTTCTTGAAATACCTTTAGA TAGCTCAGTCTATGGCCTGCCTCCAGGCACTGAAAACACTGACTCTATTCCTTACCATCTTATAGCCAACTTTCTCGAAGCATCTTTGTCTCTCAAACCT GCTTTCAGGAAAATCATTTCTGATCATGTTAAGGAACAAAAGGGCCATCCACCATTCTGTATAATCACAGACATGTTCTTTGGCTGGTGTGCAGAGATTG CACATGAGTTTGGTGCGTTTCATGCTATATTTAGTGGATGTGGAGGTTTTGGTTTCGCTTGTTACTACTCTCTGTGGTTAAATCTGCCTCATCAGAACAA TCTCTCCGATGAATTCACTTTACCAGATTTCCCTGAAGCTTCTACAATTCATGTTACACAATTGGCAGAAAATCTGAAAGAGGCCAATGGCAGAGATCTC TTCAGTGTGTGTCTGCAGAACATGCTTCCTGAATGCACGAATGCTGATGGGATTTTGGTGAACACGGTGGAGGAGCTTGACAAAGTTGGGTTGGGATATT TTCGGCGTAAAACTGGGAAACCAGTTTGGCCAATTGGGCCAGTACTCCTCTCCAATAGGAGCCAAGATCAAGCTGCAATTACACCTGAGCTATGTAAACA CTGGCTTGATACAAAACCTGCGGGCTCAGTTCTATACATATCATTTGGTTCACAGAACGTAATATCTGCATCCCAGATGATGGAATTGGCAATGGCATTG GAGGCTTGTGGCAAAAATTTTATCTGGGTTGTCAGGCCACCTATCGGCTTTGACATCAACATGGAATTCAAAGCAAAAGAGTGGTTGCCTGAAGGATTTG AAGAAAGAATGGAATATTCAAAAAGAGGGTTGTTAGTGCGCAAGTGGGCACCCCAGGTGGAAATCTTGTCTCACAAATCCGTATCAGCATTTTTGAGTCA TTGTGGCTGGAACTCGGTTCTTGAATCTTTAAGCAATGGTGTGCCGTTGATTGGGTGGCCATTGGCAGCAGAACAGTTCTACAATGTCAAGCTCTTAGAA GAACATATTGGAGTTTGTTTGGAGGTGGCTAGAGGGAAAAGCTGTGAGGTTCGGCATGAAGATATAGTGAAAAAGATCATGCTGGTAATGGATGAGACGG AGAAGGGTAATGCAATGAGAAGGAAAGCTCGTGAGGTTAGGGATATGATTATTGATGCTGTTCAATATGAGAATGATCATAAGGGTTCCTCTGTCAAAGC CATGGATGAGTTCCTGGATGCTGCCTCGCTGATGCGAGAAGGGAAAAAATGGGCGGCCGATCGTGGGGTCTAA
AA sequence Show only first row Show all	>Potri.003G210400.1 pacid=42785636 polypeptide=Potri.003G210400.1.p locus=Potri.003G210400 ID=Potri.003G210400.1.v4.1 annot-version=v4.1 MSQRKESIVMLPFMAQGHIIPFLALALQLDQTKKYTITFVNTSLNIKKLRPSIPTNSSIHLLEIPLDSSVYGLPPGTENTDSIPYHLIANFLEASLSLKP AFRKIISDHVKEQKGHPPFCIITDMFFGWCAEIAHEFGAFHAIFSGCGGFGFACYYSLWLNLPHQNNLSDEFTLPDFPEASTIHVTQLAENLKEANGRDL FSVCLQNMLPECTNADGILVNTVEELDKVGLGYFRRKTGKPVWPIGPVLLSNRSQDQAAITPELCKHWLDTKPAGSVLYISFGSQNVISASQMMELAMAL EACGKNFIWVVRPPIGFDINMEFKAKEWLPEGFEERMEYSKRGLLVRKWAPQVEILSHKSVSAFLSHCGWNSVLESLSNGVPLIGWPLAAEQFYNVKLLE EHIGVCLEVARGKSCEVRHEDIVKKIMLVMDETEKGNAMRRKAREVRDMIIDAVQYENDHKGSSVKAMDEFLDAASLMREGKKWAADRGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12890			UDP-Glycosyltransferase superf...		Potri.003G210400 [exp]	0	1
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193250 [exp]	15.03	0.9394
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G079400 [exp]	23.36	0.9332
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Potri.008G183300 [exp]	25.74	0.9288	Pt-CYP86.2
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.007G139501 [exp]	30.16	0.9212
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128200 [exp]	32.58	0.9225
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.001G450100 [exp]	33.43	0.9212
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G079300 [exp]	33.70	0.9277
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G089000 [exp]	34.27	0.9117
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G312800 [exp]	34.87	0.9226
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G141200 [exp]	35.49	0.8850

Compare expression of checked genes

Potri.003G210400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.