Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73730 515 / 6e-178 EIL AtEIL3, ATSLIM, SLIM1, EIL3 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) AT3G20770 366 / 6e-119 EIL AtEIN3, EIN3 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) AT2G27050 359 / 9e-117 EIL AtEIL1, EIL1 ETHYLENE-INSENSITIVE3-like 1 (.1) AT5G10120 287 / 1e-90 EIL Ethylene insensitive 3 family protein (.1) AT5G65100 278 / 5e-86 EIL Ethylene insensitive 3 family protein (.1) AT5G21120 271 / 1e-83 EIL EIL2 ETHYLENE-INSENSITIVE3-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015900 [exp] 954 / 0 AT1G73730 494 / 8e-170 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.004G197400 [exp] 369 / 3e-120 AT3G20770 724 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.010G247500 [exp] 367 / 5e-119 AT3G20770 578 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.009G159200 [exp] 366 / 9e-119 AT3G20770 704 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.008G011300 [exp] 365 / 4e-118 AT3G20770 560 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.001G015966 [exp] 254 / 6e-81 AT1G73730 239 / 6e-76 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.001G016032 [exp] 125 / 2e-33 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031245 [exp] 635 / 0 AT1G73730 556 / 0.0 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Lus10031817 [exp] 632 / 0 AT1G73730 555 / 0.0 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Lus10014331 [exp] 281 / 9e-88 AT5G65100 351 / 1e-116 Ethylene insensitive 3 family protein (.1) Lus10041709 [exp] 272 / 5e-84 AT5G65100 358 / 6e-119 Ethylene insensitive 3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04873 [poplar] [flax] EIN3 Ethylene insensitive 3
Representative CDS sequence Show only first row Show all	>Potri.003G210500.2 pacid=42784844 polypeptide=Potri.003G210500.2.p locus=Potri.003G210500 ID=Potri.003G210500.2.v4.1 annot-version=v4.1 ATGGGTGAATTGGAAGAGATTGGGGCTGATATTTGCTCGGACATTGAAGTTGATGATATAAGGTGTGGGAATATCGCAGAGAAAGATGTCAGTGATGAAG AAATTGAAGCAGAAGCTTTGGAGAGACGAATGTGGAAGGATCATGTCAAACTCAAAAGGATTAAAGAAAAACAGAAGCTTGCAGCGCAACAAGCTGCGGA GAAGCAAAAGCCTAAGCAGGCGACTGATCAGGCTCGGAGGAAGAAAATGGCGAGAGCCCAAGATGGGATTCTTAAGTATATGTTGAAGCTAATGGAAGTT TGCAAAGCACGTGGATTTGTGTATGGCATCATTCCTGAGAAGGGTAAGCCTGTAAGTGGTGCATCTGATAACATAAGAGCTTGGTGGAAAGAAAAAGTGA AGTTCGATAAGAATGGGCCAGCAGCCATAGCAAAGTATGAAGCAGAATGTTTGGCCATAGGTGAGGCAGAAAACAGTAGAAATGGGAACTCTCAAAGTGT TCTTCAAGATCTTCAAGATGCAACTTTAGGGTCACTTTTGTCTTCTTTGATGCAACACTGTGACCCCCCTCAAAGGAAGTACCCATTGGAGAAGGGAGTT CCGCCGCCTTGGTGGCCAACGGGAAATGAAGATTGGTGGGTAAAATTAGGACTATCCCTAGGTCAGAGCCCTCCTTATAAGAAACCACATGATCTGAAGA AGATGTGGAAAGTTGGTGTATTAACTGCTGTAATAAAGCACATGACACCTGATATTGCAAAAATTAGAAGGCATGTCCGTCAATCAAAATGCTTACAGGA TAAAATGACCGCAAAGGAGAGTGCAATCTGGCTAGGGGTGTTGAGTCGAGAGGAATCTCTTACTCAGCAACCTAGCATTGACAATGGAACATCTGGTGTA ACCGAATCTCCTCAAGGTGGACGTGGCCAAAAGAAGAAACCTGCCATTAGCAGTGACAGTGATTATGATGTCGATGGTGTTGATGATGGTGTGGGTTCTG TTTCATCTAAAGATAATAGGAGAAATCAACCAATGGATGTGGAACCATTAAGCAGTAGAAATGATATTACCATTCCTGTCCAAGACAAGGAGCTAGGGGA AAAGCGACGAAGGAGAAAAAGGCCCCGTGAGAAGTCAAGTCATGCTGATCAACAGTCCCAACCACCTGTTGATGAATGTTTGGGCGTTGAGCAGACAAAT ACCTTGCCTGATATAAACCACACTGATTTACAGCCAATTGAATATCAGATGCACAATACTCAGCATGAGAATTTTACCTCTTCAGCTTTAATGCCTATGG AGAAAGGTCTTGTGGGTGAATCCAGTCTACCCCAATCTGACTTTAACTACTATGCTGGTGTTCCCTCAACCAATGTCAATTCTACGGAGAGAATTTTTGT GGACAGAGGGGCTGCCATCTATCCATTGGGCCAAAATTCAGAGCTGCACCATGAGACTACTTATAGTAATATCTATAATCCATCACTTGATTACGGGACC AATCATGATGGAAAGCATTCTCAGATGGCAATGAACGTGAGGCCAGAGGATGACAGATTCCTTATACCAGCTTTGCATGGAAATGGAAATGGAAATGACT TGACCGGAGGAGAACCACATCATTTTGCCAAAGATACTTTACCCCCTGAGCAAGATACAGCTGTTGATAGGCATTTTGAATTTGACTTGCCAGATTTTGC AATTAACAGCCCATTCCTTGAAATGAGTTCGTTTTCTTTAGATAACCTATTTGTTGATCCTGAAGATGATTTGATCCAATGCTTTGGTGCATAA
AA sequence Show only first row Show all	>Potri.003G210500.2 pacid=42784844 polypeptide=Potri.003G210500.2.p locus=Potri.003G210500 ID=Potri.003G210500.2.v4.1 annot-version=v4.1 MGELEEIGADICSDIEVDDIRCGNIAEKDVSDEEIEAEALERRMWKDHVKLKRIKEKQKLAAQQAAEKQKPKQATDQARRKKMARAQDGILKYMLKLMEV CKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAIGEAENSRNGNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGV PPPWWPTGNEDWWVKLGLSLGQSPPYKKPHDLKKMWKVGVLTAVIKHMTPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLTQQPSIDNGTSGV TESPQGGRGQKKKPAISSDSDYDVDGVDDGVGSVSSKDNRRNQPMDVEPLSSRNDITIPVQDKELGEKRRRRKRPREKSSHADQQSQPPVDECLGVEQTN TLPDINHTDLQPIEYQMHNTQHENFTSSALMPMEKGLVGESSLPQSDFNYYAGVPSTNVNSTERIFVDRGAAIYPLGQNSELHHETTYSNIYNPSLDYGT NHDGKHSQMAMNVRPEDDRFLIPALHGNGNGNDLTGGEPHHFAKDTLPPEQDTAVDRHFEFDLPDFAINSPFLEMSSFSLDNLFVDPEDDLIQCFGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.003G210500 [exp]	0	1
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.016G131900 [exp]	5.00	0.8808
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.013G018700 [exp]	10.19	0.8674
AT5G14540			Protein of unknown function (D...		Potri.012G083200 [exp]	11.74	0.8455
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Potri.015G071200 [exp]	13.56	0.8320
AT4G33890			unknown protein		Potri.009G090500 [exp]	13.74	0.8277
AT4G24200			Transcription elongation facto...		Potri.005G241400 [exp]	15.87	0.8448
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.004G209000 [exp]	17.23	0.8633
AT3G47940			DNAJ heat shock family protein...		Potri.015G066100 [exp]	17.32	0.8493
AT1G24560			unknown protein		Potri.008G183800 [exp]	17.40	0.7896
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Potri.010G098200 [exp]	18.43	0.8354

Compare expression of checked genes

Potri.003G210500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.