Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20480 91 / 5e-18 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 87 / 5e-17 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 86 / 1e-16 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT5G38120 83 / 9e-16 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT5G36880 82 / 2e-15 ACS acetyl-CoA synthetase (.1.2) AT4G19010 81 / 5e-15 AMP-dependent synthetase and ligase family protein (.1) AT3G21230 79 / 2e-14 4CL5 4-coumarate:CoA ligase 5 (.1) AT1G20500 76 / 1e-13 AMP-dependent synthetase and ligase family protein (.1) AT5G16340 75 / 5e-13 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 74 / 6e-13 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085701 [exp] 4494 / 0 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.003G210701 [exp] 4489 / 0 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.005G227800 [exp] 257 / 9e-73 AT3G21230 47 / 3e-05 4-coumarate:CoA ligase 5 (.1) Potri.005G248500 [exp] 105 / 1e-22 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 97 / 3e-20 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.001G055700 [exp] 95 / 2e-19 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.012G094800 [exp] 94 / 5e-19 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G112800 [exp] 92 / 1e-18 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G230200 [exp] 91 / 3e-18 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027377 [exp] 2410 / 0 AT4G05160 95 / 2e-19 AMP-dependent synthetase and ligase family protein (.1) Lus10002549 [exp] 1506 / 0 AT4G05160 74 / 5e-13 AMP-dependent synthetase and ligase family protein (.1) Lus10027378 [exp] 875 / 0 AT3G23510 51 / 2e-06 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10002550 [exp] 353 / 4e-111 ND / Lus10002535 [exp] 228 / 8e-63 AT1G20510 79 / 3e-15 OPC-8:0 CoA ligase1 (.1.2) Lus10007144 [exp] 94 / 2e-20 ND 47 / 7e-06 Lus10016135 [exp] 91 / 4e-18 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 89 / 2e-17 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 88 / 3e-17 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10012280 [exp] 88 / 5e-17 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0314 [poplar] [flax] PP-binding PF00550 [poplar] [flax] PP-binding Phosphopantetheine attachment site CL0063 [poplar] [flax] NADP_Rossmann PF01593 [poplar] [flax] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.003G210600.2 pacid=42786805 polypeptide=Potri.003G210600.2.p locus=Potri.003G210600 ID=Potri.003G210600.2.v4.1 annot-version=v4.1 ATGGACCCATTAGTATCAATTGAGGATCAATTTGTCAAGCTACATCCATGCCTGCCTGTGAACACAAGAATTGGAATAGTAGGAGGTGGTCCAAGTGGCA TATCTGCTGCTTATGCATTGGCAAAGCTTGGTTATCAGAATGTCACAGTGTTAGAGAAGCATCACACTGTGGGTGGCATGTGTGAATCAGTAGACATTGA AGGAAGGATTTATGATCTTGGTGGTCAGGTTTTGGCTAAGAACAGTGCACCTGTCATTTTTCACTTGGCAAAAGAAGTTGGATCAGAATTAGAAGAAATG GATTCCCATAAGCTTGCTCATATTGACAGCTCTACAGGGAAGTATCAGGACATTAAAGTTGCAGATGATTATGTAGCTGTGATGTCACTGACCTTAGAAC TGCAGGATAAGGCAAAGGATTCTGGTCGAATTGGAGTCCATGCTGTGAGTGAATTAGCTGCAGACTTGACTCCTACGTATCTCGAGAGTCGTGGATTCAA ATCTGTTCCCAAATCTGTGGCTTATGGATATACTGCTTCTGGTTATGGATTTGTTCAAGACATGCCTTATGCATACATTCATGAGTTCACCCGGACTTCC ATGGCTGGAAAGATTCGGCGTTTCAAAGGTGGATACACTAGTCTTTGGCAGAAGATCAGTGAATCACTTCCAATTGAGGTTAATTGCAAAACTGATGTGC TGGCCATCAGGCGCAATTCCGACAGTGTTAGAGTTGATGTTAAAAGAAACAATGGGGAAATTCTAGAAATGGAGTTTGATAAGATAATTATCTCTGGTTC ATTTCCTTTCACAAATGGAAATACTTATAGATTTCCAGCAGAAAAATCTACAGAATCTGAGACCAAAGTGACGGATCTCAGTGAAGTCGAAAGATATTTC TTCAGAAAAGTTCAGACAATCGACTACTACACCACTGTTTTAAAGATCAAAGGGCTAGAAGACATGCCAGTTGGATTTTATTACTTTGGTGAATATATGG AAGATCCTGCAACAATTGGACATCCCGTTGCGATGCAGAAATTCTATGCTGACACTGACATTTTCTTATTTTGGTCCTATGGGAACTCTTTCGATATAAA GGGACCAACAGTCGCTGAGCTAGCCAAGAAGGTAGTCATGTCCATGGGGGCAAAAGTTGAGGAAGAAGTTCTCCAGAGAAGATTCAAGTACTTCCCCCAT GTTGGTAGCCAAGAAATGAAGGATGGATTCTATGAGAAACTGGAGTCTGAACTTCAAGGCCAGAGGAACACTTACTATGTTGGTGGGCTCATGGCATTTG AACTCACGGAGAGAAATTCATCTTATGCCATGGATCTTATCTGCAAGCATTTTGCAAATAACAACTCGGTACCTATGTTTCCATATGTTAAGAGTTTGTT TTCTTTGAAATCGGATTGCTGGGATAGAAATCCAAAAGAACTAGGTGAAGGAGTGGAGTTTCCTGATCTTTCTACACTTGATGGTTACTTGAAACACTGG GGAACTGAAAGTATGACGAAGGACAAAACACTCTATACGTGGATTGGTGAAGATGGGGCTGTAGTATGTCAAAGAACTTATGCAGAACTTCATGCGAAAG CTTCCTGCATTGCTCGTAAACTCTTGACCAGCCGAAAACCAGTTATCAAGCCCGGTGACCGGGTCCTCTTAGTCTATGTACCAGGGCTGGACTTTATTGA TGCCTTTTTTGGGTGCTTAAGAGCCAAGGTCCTACCAGTCCCAGTCCTCCCACCAGATCCTCTGCAAAGAGGTGGGCAAGCACTGTTGAAGATTGAAAGC ATTGCTAAATCTTGCAATGCAGTTGCAATTCTGTCAACCCTTCTTTATCACTCCGCAGTTCGGGCAGGTTCTGTGAAGAATCTAATCTCATTAGCAGGGA AAAATGGGAAATGGCCGAACCTTCCATGGATGCATACAGATTCTTGGCTCAAGGACTCCAAAGTCCTGGCTCCAGGAAACATAGCATATGAATCTGAATG TCAGCCGGATGATTTGTGTTTTCTGCAGTTCACTTCAGGGTCAACTGGTGATGCTAAAGGTGTAATGATAACTCATGGTGGTCTTATTCACAATGTGAAG TTGATGAAGAGGATATATAAGAGCACCTCAAAGACAGTACTAGTCAGCTGGCTTCCGCAATACCATGACATGGGGCTAATTGGTGGACTTTTTACTGCTC TAGTTAGTGGTGGATCAGCAATTTTGTTTTCTCCAATGACTTTTATCAAGAACCCTCTTCTATGGCTTCAGATCATGAGCAAATACAACGCTACTCACAG TGCCGGTCCCAACTTCGCCTTTGAACTGCTAATCCGAAGATTGGAGTATGCTGACAAGGATAAGGTTCGAAACTTTGACCTCTCTTCTTTGATTTTCCTC ATGGTTGCTGCTGAACCAGTGAGGCAGAGAACTTTGAAAAGATTTGTTGAGCTCACTAGGCCTTTTGGTCTTTCGCAAGAAGTAATGGCTCCTGGTTATG GATTGGCCGAGAATTGTGTGTTCGTCAGCTGTGCATATGGAGAAGGTAAGCCCATATTGGTAGACTGGCAAGGAAGAGTCTGTTGCGGGTATGTGGAACC AAATGGTGAAGATATTGACATCCGAATAGTCGATCCAGAGTCCAATGAGGAGCTGAAAGAATCTGGAAAGGAAGGAGAGATATGGATTAGTAGTCCGAGT GCTGGAATTGGGTACTGGGGAAGGGAGGAACTTAGCCAAAGTACTTTCAGAAATGTGCTTCAAAATCATCCAGGAAGAAAATATACAAGAACCGGAGACT TGGGACGGATTATTGATGGAAAGGTGTTCATCACGGGAAGAATCAAGGATCTGATTATAGTAGCCGGAAGGAATATTTACTCTACAGATGTAGAAAAAAC AGTTGAGAGTGCATCCGAACTTCTACGCCCAGGTTGCTGTGCTGTCATTGGTGTTCCTGAGGAAGTCTTGTCATCAAAAGGGATTTCACTTCCTGATTGT TCTGACCAGGTTGGCTTGGTTGTAATTGCCGAGGTTAGAGATGCTAAGCCTGTTGACAAGGATGTGGTGGAGAACATAAGGAGTCGTGTCGCAGAAGAAC ATGGCGTGACTGTGGCTTCTATCAAGCTGATCAAGCCCAGGACTATCAGCAAAACAACATCAGGTAAAATCAAGAGGTTCGAATGCCTCAAACATTTTAC TGATGGAACTCTGAACACAGTGCCAGACCCAATTTTTGCAAAACGAAAATTGCTTCGCTCATTCACCACCGGGACATGTAAAGAGGGATTAACTCCTCGA TCTCGGCTTGCAACATCTCCTTTACCAACCGCCAAATTCAGCAAAAAAGAAATAGTAGAATTTCTGAAGGGGCTTGTTTCTGAGCAAACAGGAATTCCTA TCAAGAATATCTCTGCCACCGAGAGTCTTGTATCGTATGGAATTGACTCGATAGGTGTGGTCAGAGCGGCTCAAAAACTTTCAGATTTCCTCGGTGTGCC AGTTGGTGCAGTCGATATCTTCACTGCCAACTGCATTGCAGAGTTGGCAAGCTTCTCAGAGAATCTTGCGATGAAGTCTCAACCTCACCTCATGAACTCT CAATCCTATCAACCAGAACCAGATATTGATTCTTCTGAGTTTGACACAGAAGTTTCCACGACTCGCCTAATCAGTGTCTGGTTTTTCCAACTTCTTGCCC TTGTTTATGTCTGTGCCATGCTGAGCTTTCCTGCTTATTTTTCAGTTTCGGCTTTCACAAGTTTGCTTTCAGCAAGTCATCTGCTAAATGAGGAATTTCC CTGGTGGAATTACTTGATTCCCTTGGCATTGGCTCCTCTTGCTTGGATCCTTGGCATCATTTCTACTTGTATTAGCATTGCTTTCTTGGGGAATTCTTTC TTGAAACCTAACTATGCCCTGACCCCTGAAGTATCTATCTGGTCTATTCACTTTGTCAAGTGGTGGGCACTGTACAAGGCCCAAGAAATCTCTTCAAAAG TTTTTGCAGAGCATTTGAGAGGAACTGTGTTCCTTAATTATTGGTTTGAGATGCTCGGCGCTAAGATCGGATCTTCAGTTTTGCTTGATACAGTTGACAT TACAGATCCATCTCTAGTTTCAATTGGAGATGGAGCTGTAATTGCGGAAGGGGCGTTGCTTCAAAGCCATGAGGTAAAGAATGGAATCTTGAGCTTCCAA GCCATTAGAATCGGCCGAAATTCTTCGGTTGGTCCTTACGCTGTAATCCAGAAAGGAAGTACATTGGGAGAAGAAGCAGATGTACAGCCCTTGCAGAAGA CAGAAGGTGGAAAAGCTGTACTCAAATCTAGCAAGGCTCACAATGTTCAGAAGGGTGCAATGCTGTCTGATAAGGCCACCTACCACTTCATGGGCATCTA CATGGTTGGTCTCCTCAGCACTCTCTCAGCAGCCATTATCTACTTCCTTTACATTTGGCTATCTCAAAAGCCTGCCTCCATTCAACACTTCTCATTTCTC TGCATCTCTGGAGCCTTTCACTGGACTCCATTCACCGTCATTGCTTATGCTACAATGATTGCTAATGTCCCATCAAACCCAGCCACCTTTGCAATCTCAG TTGCTATTGTTTACTTGGCTCATGGCCTGATACTCAGCCTCCTCACATGCACTTTGGCCCATTTTCTTGCTGAAAAACAAGAGAAAAGGGAATCCCACAT GAAAGTCTGGCTCCGGCATAGAATTACCATTGCCTGCCACCTTAGATTTGCCAAACTCCTGTCAGGAACAGAAGCATTCTGCATTTATTTGCGCCTTTTG GGTGCAAGTGTCGGTGAGCATTGTTCCATCAGGGCTGTCAATCCTGTATCAGACCCAGAGCTCATTACAATTGGTGATGGTGTGCACCTTGGTGACTTCA GTCGGATGATTGCTGGCTTCTATTCATCCAGTGGGTTTACTCAAGGAAAAATTGAAGTGCAGGACAATTCGGTTGTCGGGAGTCAAAGCCTCATCCTCCC TGGTTCGGTTGTTCAAAAGGATGTGATTCTTGGTGCTCTTTCAGTGGCTCCTGCAAATTCAGTTCTTCGACAAGGCGGCGTCTATATTGGATCTCAAACT CCAGTGATGATCAAGAACACCATGCATGCCTTGGATGACAGGATAGAAGAGATGGACTTCAAATACAAGAAGATAGTTGGCAATTTAGCTGCAAATTTGG CTGCCACTACTCTGAAGGTTAAAACAAGGTATTTCCATCGAATTGGTGTTAGTGGGAAGGGACACCTGAAGATTTATGACAACCTGAAAGGATTTCCAGA CCACAAGATTTTCCAGGCTGGGAAGAGCTATCCTATTGTAGTCAGGCATAGCAATAGCTTGAGTGCTGATGATGATGCTAGAATCGATGCACGTGGAGCA GCGATAAGAATACTTTCAGATGACAATGGAAGCAACTCCTCTTCGCTTCTTGATCTAACATTGAAGACAGGCAAGGCATTCTATGCACGCACGATTGCTG ATTTTGCAACATGGTTAGTTTGTGGACTTCCTGCAAGGGAGCAGCATGTGAAGCGAGCCCCACATATCCGTGATGCAGTTTGGATGTCTCTTCGCAATGC GAATTCTTTTGCTGATCTACACTACTACTCAAATATCTGCAGGCTCTTCAGGTTTTCCGACGGTCAGGAAATGTATGTGAAATTCAAATTGCGGCCTGGT GACGAAAACATAAGTGAGGATTCAGGTAAAGTTGAGCCTATGGGAATTCTCCCACCAGAAACAGGTGCAATTCCACGGGATGAAAAGGATACTCGTCCCT TACTTTTCCTAGCCGAAGATTTCCAAAGCCGTGTAAGTTCTCCAGGAGGCGTTCGCTACATTTTCCAGCTGCAAATCCGACCTGTTCCACATGATGATGC CACTTGTGACGTTGCACTTGACTGCACCAAACCATGGGATGAGTCTGAATTCCCTTACATTGATATAGGGGAAGTTCACATTGATCAAAATCTCACCGGT GCAGAATCAGAAGCACTAGAGTTTAATCCTTATATTCGATGCCATGAGGTGGATGTGATCCGGGCCACTTCATCCTCCCAAAGTGCTTCAATTGATCATG GTCGTTCATTGATCTATGAAATTTGTCAGCATTTGAGGAATGGAGAACCACTTCCAGAAGCTTGGAGGATCTTCATAGAACAAAGTGATGTTAAAGTGGA CCTTTCAGGCTGTCCAATGGCAGCAGCATTGGAGAAAAAGGACTCGGGAAAAGTTACACTAGCAAGGACATGGTATCAGACCTTATGGGTCATTTTTGCT CAACCATTGCTGCAAACATTTCTTCCGTACTTCCTGATGGGGTTGCTCATCTTTGCTCCACTGAACTGGATTCTTCTCTTGAAGGAAAGCAAGAAAGTCG CAATGCATTGGTTTCTTCCTTTGGTTTGGGTTTCTTCAGGAGTTCTAGCAGCATTAGCATGTGTTGTGGCCAAGTGGATTCTTGTGGGGAAAAAGAAAGA AGGCCAAACAGTACAGATTTGGAGCATAGGAGTCTTCATGGACACTGTGTGGCAAGCTTTCAGAACTGTAGTAGGGGACTACTTCATGGAAATGACTAGT GGGTCTATCTTATTTTTGCTATGGCTAAAGCTCATGGGTTCAGACATTGATTTGGACCAAGGAGCTTATGTAGATAGCATGGGAGCAGCATTGAATCCAG AAATGGTGGAGATTGAGAGAGGTGGTTGTGTAGGAAGAGAAGCTTTACTGTTTGGACATATATATGAAGGTGAAGGAGGGAAAGTTAAGTTTGGCAGGAT AAGAGTTGGAGAAGGTGGATTTGTAGGGAGTAGAGCAATTGCCATGCCTGGTGTTAGAGTAGAAATAGGAGGCAATCTTAGTGCTCTTTCTCTTGCCATG AAAGAAGAAATTGTTAGGTCTATGTGA
AA sequence Show only first row Show all	>Potri.003G210600.2 pacid=42786805 polypeptide=Potri.003G210600.2.p locus=Potri.003G210600 ID=Potri.003G210600.2.v4.1 annot-version=v4.1 MDPLVSIEDQFVKLHPCLPVNTRIGIVGGGPSGISAAYALAKLGYQNVTVLEKHHTVGGMCESVDIEGRIYDLGGQVLAKNSAPVIFHLAKEVGSELEEM DSHKLAHIDSSTGKYQDIKVADDYVAVMSLTLELQDKAKDSGRIGVHAVSELAADLTPTYLESRGFKSVPKSVAYGYTASGYGFVQDMPYAYIHEFTRTS MAGKIRRFKGGYTSLWQKISESLPIEVNCKTDVLAIRRNSDSVRVDVKRNNGEILEMEFDKIIISGSFPFTNGNTYRFPAEKSTESETKVTDLSEVERYF FRKVQTIDYYTTVLKIKGLEDMPVGFYYFGEYMEDPATIGHPVAMQKFYADTDIFLFWSYGNSFDIKGPTVAELAKKVVMSMGAKVEEEVLQRRFKYFPH VGSQEMKDGFYEKLESELQGQRNTYYVGGLMAFELTERNSSYAMDLICKHFANNNSVPMFPYVKSLFSLKSDCWDRNPKELGEGVEFPDLSTLDGYLKHW GTESMTKDKTLYTWIGEDGAVVCQRTYAELHAKASCIARKLLTSRKPVIKPGDRVLLVYVPGLDFIDAFFGCLRAKVLPVPVLPPDPLQRGGQALLKIES IAKSCNAVAILSTLLYHSAVRAGSVKNLISLAGKNGKWPNLPWMHTDSWLKDSKVLAPGNIAYESECQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVK LMKRIYKSTSKTVLVSWLPQYHDMGLIGGLFTALVSGGSAILFSPMTFIKNPLLWLQIMSKYNATHSAGPNFAFELLIRRLEYADKDKVRNFDLSSLIFL MVAAEPVRQRTLKRFVELTRPFGLSQEVMAPGYGLAENCVFVSCAYGEGKPILVDWQGRVCCGYVEPNGEDIDIRIVDPESNEELKESGKEGEIWISSPS AGIGYWGREELSQSTFRNVLQNHPGRKYTRTGDLGRIIDGKVFITGRIKDLIIVAGRNIYSTDVEKTVESASELLRPGCCAVIGVPEEVLSSKGISLPDC SDQVGLVVIAEVRDAKPVDKDVVENIRSRVAEEHGVTVASIKLIKPRTISKTTSGKIKRFECLKHFTDGTLNTVPDPIFAKRKLLRSFTTGTCKEGLTPR SRLATSPLPTAKFSKKEIVEFLKGLVSEQTGIPIKNISATESLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTANCIAELASFSENLAMKSQPHLMNS QSYQPEPDIDSSEFDTEVSTTRLISVWFFQLLALVYVCAMLSFPAYFSVSAFTSLLSASHLLNEEFPWWNYLIPLALAPLAWILGIISTCISIAFLGNSF LKPNYALTPEVSIWSIHFVKWWALYKAQEISSKVFAEHLRGTVFLNYWFEMLGAKIGSSVLLDTVDITDPSLVSIGDGAVIAEGALLQSHEVKNGILSFQ AIRIGRNSSVGPYAVIQKGSTLGEEADVQPLQKTEGGKAVLKSSKAHNVQKGAMLSDKATYHFMGIYMVGLLSTLSAAIIYFLYIWLSQKPASIQHFSFL CISGAFHWTPFTVIAYATMIANVPSNPATFAISVAIVYLAHGLILSLLTCTLAHFLAEKQEKRESHMKVWLRHRITIACHLRFAKLLSGTEAFCIYLRLL GASVGEHCSIRAVNPVSDPELITIGDGVHLGDFSRMIAGFYSSSGFTQGKIEVQDNSVVGSQSLILPGSVVQKDVILGALSVAPANSVLRQGGVYIGSQT PVMIKNTMHALDDRIEEMDFKYKKIVGNLAANLAATTLKVKTRYFHRIGVSGKGHLKIYDNLKGFPDHKIFQAGKSYPIVVRHSNSLSADDDARIDARGA AIRILSDDNGSNSSSLLDLTLKTGKAFYARTIADFATWLVCGLPAREQHVKRAPHIRDAVWMSLRNANSFADLHYYSNICRLFRFSDGQEMYVKFKLRPG DENISEDSGKVEPMGILPPETGAIPRDEKDTRPLLFLAEDFQSRVSSPGGVRYIFQLQIRPVPHDDATCDVALDCTKPWDESEFPYIDIGEVHIDQNLTG AESEALEFNPYIRCHEVDVIRATSSSQSASIDHGRSLIYEICQHLRNGEPLPEAWRIFIEQSDVKVDLSGCPMAAALEKKDSGKVTLARTWYQTLWVIFA QPLLQTFLPYFLMGLLIFAPLNWILLLKESKKVAMHWFLPLVWVSSGVLAALACVVAKWILVGKKKEGQTVQIWSIGVFMDTVWQAFRTVVGDYFMEMTS GSILFLLWLKLMGSDIDLDQGAYVDSMGAALNPEMVEIERGGCVGREALLFGHIYEGEGGKVKFGRIRVGEGGFVGSRAIAMPGVRVEIGGNLSALSLAM KEEIVRSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20480			AMP-dependent synthetase and l...		Potri.003G210600 [exp]	0	1
AT1G20480			AMP-dependent synthetase and l...		Potri.003G210701 [exp]	1.41	0.9392
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Potri.005G069800 [exp]	9.16	0.6678
AT2G40435			unknown protein		Potri.013G154100 [exp]	10.58	0.5995
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G194200 [exp]	14.69	0.6215	CESA2.6
					Potri.013G135900 [exp]	27.38	0.5866
					Potri.005G043600 [exp]	30.19	0.5684
AT3G06880			Transducin/WD40 repeat-like su...		Potri.002G021600 [exp]	32.21	0.6321
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.004G084600 [exp]	35.84	0.6436
AT5G27350		SFP1	Major facilitator superfamily ...		Potri.001G226600 [exp]	36.74	0.5917
AT3G25640			Protein of unknown function, D...		Potri.010G131600 [exp]	41.02	0.5992

Compare expression of checked genes

Potri.003G210600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.