Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20480 91 / 5e-18 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 87 / 4e-17 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 87 / 8e-17 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT5G38120 84 / 5e-16 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT5G36880 82 / 2e-15 ACS acetyl-CoA synthetase (.1.2) AT4G19010 81 / 7e-15 AMP-dependent synthetase and ligase family protein (.1) AT3G21230 80 / 1e-14 4CL5 4-coumarate:CoA ligase 5 (.1) AT1G20500 76 / 1e-13 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 75 / 5e-13 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 74 / 6e-13 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085701 [exp] 4580 / 0 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.003G210600 [exp] 4527 / 0 AT1G20480 91 / 4e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.005G227800 [exp] 258 / 4e-73 AT3G21230 47 / 3e-05 4-coumarate:CoA ligase 5 (.1) Potri.005G248500 [exp] 105 / 1e-22 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 97 / 4e-20 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.001G055700 [exp] 95 / 2e-19 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.012G094800 [exp] 94 / 4e-19 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G112800 [exp] 92 / 1e-18 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G230200 [exp] 92 / 3e-18 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027377 [exp] 2442 / 0 AT4G05160 95 / 2e-19 AMP-dependent synthetase and ligase family protein (.1) Lus10002549 [exp] 1516 / 0 AT4G05160 74 / 5e-13 AMP-dependent synthetase and ligase family protein (.1) Lus10027378 [exp] 875 / 0 AT3G23510 51 / 2e-06 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10002550 [exp] 352 / 1e-110 ND / Lus10002535 [exp] 230 / 3e-63 AT1G20510 79 / 3e-15 OPC-8:0 CoA ligase1 (.1.2) Lus10007144 [exp] 94 / 2e-20 ND 47 / 7e-06 Lus10016135 [exp] 91 / 3e-18 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 89 / 2e-17 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 89 / 2e-17 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026143 [exp] 88 / 5e-17 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0314 [poplar] [flax] PP-binding PF00550 [poplar] [flax] PP-binding Phosphopantetheine attachment site CL0063 [poplar] [flax] NADP_Rossmann PF01593 [poplar] [flax] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.003G210701.1 pacid=42787483 polypeptide=Potri.003G210701.1.p locus=Potri.003G210701 ID=Potri.003G210701.1.v4.1 annot-version=v4.1 ATGGACCCATTAGTATCAATTGAGGATCAATTTGTCAAGCTACATCCATGCCTGTCTGTGAACACAAGAATTGGAATAGTAGGAGGTGGTCCAAGTGGCA TATCTGCTGCTTATGCATTGGCAAAGCTTGGTTATCAGAATGTCACAGTGTTAGAGAAGCATCACACTGTGGGTGGCATGTGTGAATCAGTAGACATTGA AGGAAGGATTTATGATCTTGGTGGTCAGGTTTTGGCTAAGAACAGTGCACCTGTCATTTTTCACTTGGCAAAAGAAGTTGGATCAGAATTAGAAGAAATG GATTCCCATAAGCTTGCTCATATTGACAGCTCTACAGGGAAGTATCAGGACATTAAAGTTGCAGATGATTATGTAGCTGTGATGTCACTGACCTTAGAAC TGCAGGATAAGGCAAAGGATTCTGGTCGAATTGGAGTCCATGCTGTGAGTGAATTAGCTCAAGACTTGACTCCTACGTATCTCGAGAGTCGTGGATTCAA ATCTGTTCCCAAATCTGTGGCTTATGGATATACTGCTTCTGGTTATGGATTTGTTCAAGACATGCCTTATGCATACATTCATGAGTTCACCCGGACTTCC ATGGCTGGAAAGATTCGGCGTTTCAAAGGTGGATACACTAGTCTTTGGCAGAAGATCAGTGAATCACTTCCAATTGAGGTTAATTGCAAAACTGATGTGC TGGCCATCAGGCGCAATTCCGACAGTGTTAGAGTTGATGTTAAAAGAAACAATGGGGAAATTCAAGAAATGGAGTTTGATAAGATAATTATCTCTGGTTC ATTTCCTTTCACAAATGGAAATACTTATAGATTTCCAGCAGAAAACTCTACAGAATCTGAGACTGAAGTGATGGATCTCAGTGAAGTCGAAAGATATTTC TTCAGAAAAGTTCAGACAATCGACTACTACACCACTGTTTTAAAGATCAAAGGGCTAGAAGACATGCCAGTTGGATTTTATTACTTTGGTGAATATATGG AAGATCCTGCAACAATTGGACATCCCGTTGCGATGCAGAAATTCTATGCTGACACTGACATTTTCTTATTTTGGTCCTATGGGAACTCTTTCGATATAAA GCGACCAACAGTCGCTGAGCTAGCCAAGAAGGTAGTCATGTCCATGGGGGCAAAAGTTGAGGAAGAAGTTCTCCAGAGAAGATTCAAGTACTTCCCCCAT GTTGGTAGCCAAGAAATGAAGGATGGATTCTATGAGAAACTGGAGTCTGAACTTCAAGGCCAGAGGAACACTTACTATGTTGGTGGGCTCATGGCATTTG AACTCACGGAGAGAAATTCATCTTATGCCATGGATCTTATCTGCAAGCATTTTGCAAATAACAACTCGGTACCTATGTTTCCATATGTTAAGAGTTTGTT TTCTTTGAAATCGGATTGCTGGGATAGAAATCCAAAAGAACTAGGTGAAGGAGTGGAGTTTCCTGATCTTTCTACACTTGATGGTTACTTGAAACACTGG GGAACTGAAAGTATGACGAAGGACAAAACACTCTATACGTGGATTGGTGAAGATGGGGCTGTAGTATGTCAAAGAACTTATGCAGAACTTCATGCGAAAG CTTCCTGCATTGCTCGTAAACTCTTGACCAGCCGAAAACCAGTTATCAAGCCCGGTGACCGGGTCCTCTTAGTCTATGTACCAGGGCTGGACTTTATTGA TGCCTTTTTTGGGTGCTTAAGAGCCAAGGTCCTACCAGTCCCAGTCCTCCCACCAGATCCTCTGCAAAGAGGTGGGCAAGCACTGTTGAAGATTGAAAGC ATTGCTAAATCTTGCAATGCAGTTGCAATTCTGTCAACCCTTCTTTATCACTCCGCAGTTCGGGCAGGTTCTGTGAAGAATCTAATCTCATTAGCAGGGA AAAATGGGAAATGGCCGAACCTTCCATGGATGCATACAGATTCTTGGCTCAAGGACTCCAAAGTCCTGGCTCCAGGAAACATAGCATATGAATCTGAATG TCAGCCGGATGATTTGTGTTTTCTGCAGTTCACTTCAGGGTCAACTGGTGATGCTAAAGGTGTAATGATAACTCATGGTGGTCTTATTCACAATGTGAAG TTGATGAAGAGGATATATAAGAGCACCTCAAAGACAGTACTAGTCAGCTGGCTTCCGCAATACCATGACATGGGGCTAATTGGTGGACTTTTTACTGCTC TAGTTAGTGGTGGATCAGCAATTTTGTTTTCTCCAATGACTTTTATCAAGAACCCTCTTCTATGGCTTCAGATCATGAGCAAATACAACGCTACTCACAG TGCCGGTCCCAACTTCGCCTTTGAACTGCTAATCCGAAGATTGGAGTATGCTGACAAGGATAAGGTTCGAAACTTTGACCTCTCTTCTTTGATTTTCCTC ATGGTTGCTGCTGAACCAGTGAGGCAGAGAACTTTGAAAAGATTTGTTGAGCTCACTAGGCCTTTTGGTCTTTCGCAAGAAGTAATGGCTCCTGGTTATG GATTGGCCGAGAATTGTGTGTTCGTCAGCTGTGCATATGGAGAAGGTAAGCCCATATTGGTAGACTGGCAAGGAAGAGTCTGTTGCGGGTATGTGGAACC AAATGGTGAAGATATTGACATCCGAATAGTCGATCCAGAGTCCAATGAGGAGCTGAAAGAATCTGGAAAGGAAGGAGAGATATGGATTAGTAGTCCGAGT GCTGGAATTGGGTACTGGGGAAGGGAGGAACTTAGCCAAAGTACTTTCAGAAATGTGCTTCAAAATCATCCAGGAAGAAAATATACAAGAACCGGAGACT TGGGACGGATTATTGATGGAAAGGTGTTCATCACGGGAAGAATCAAGGATCTGATTATAGTAGCCGGAAGGAATATTTACTCTACAGATGTAGAAAAAAC AGTTGAGAGTGCATCCGAACTTCTACGCCCAGGTTGCTGTGCTGTCATTGGTGTTCCTGAGGAAGTCTTGTCATCAAAAGGGATTTCACTTCCTGATTGT TCTGACCAGGTTGGCTTGGTTGTAATTGCCGAGGTTAGAGATGCTAAGCATGTTGATAAGGATGTGGTGGAGAACATAAAGACTCGTGTCGCAGAAGAAC ATGGCGTGACTGTGGCTTCTATCAAGCTGATCAAGCCCAGGACTATCAGCAAAACAACATCAGGTAAAATCAAGAGGTTCGAATGCCTCAAACATTTTAC TGATGGAACTCTAAACACAGTGCCAGACCCATTTTTCGCAAAACGAAAATTGCTTCGTTCATTCACCACCGGGACATCTAAAGAGGGATTAACTCCTCGA TCTCGGTTTGCAACATCTCCTTTACCAACCGCCAAATTCAGCAAAAAAGAAATAGTAGAATTTCTGAAGGGGCTTGTTTCTGAGCAAACAGGAATTCCTA TCAAGAATATCTCTGCTACCGAGAGTCTTGTATCGTATGGAATTGACTCGATAGGTGTGGTCAGAGCGGCTCAAAAACTTTCAGATTTCCTCGGTGTGCC AGTTGGTGCAGTCGATATCTTCACTGCCACCTGCATTGCAGACTTGGCAAGCTTCTCAGAGAATCTTGCGATGAAGTCTCAACCTCACCTCATGAACTCT CAATCCTATCAACCAGAACCTGATATTGATTCTGCTGAGTTTGACACAGAAGTTTCCACGACTCGCCTAATCAGTGTCTGGTTTTTCCAACTTCTTGCCC TTGTTTATGTCTGTGCCATGCTGAGCTTTCCTGCTTATTTTTCAGTTTCGGCTTTCACAAGTTTGCTTTCAGCAAGTCATATGCTAAATGAGGAATTTCC CTGGTGGAATTACTTGATTCCCTTGGCATTGGCTCCTCTTGCTTGGATCCTTGGCATCATTTCTACTTGTATTAGCATTGCTTTCTTGGGGAATTCTTTC TTGAAACCTAACTATGCCCTGGCCCCTGAAGTATCTATCTGGTCTATTCACTTTGTCAAGTGGTGGGCACTGTACAAGGCCCAAGAAATCTCTTCAAAAG TTTTTGCAGAGCATTTGAGAGGAACTGTGTTCCTTAATTATTGGTTTGAGATGCTCGGCGCTAAGATCGGATCTTCAGTTTTGCTTGATACAGTTGACAT TACAGATCCATCTCTAGTTTCAATTGGAGATGGAGCTGTAATTGCGGAAGGGGCATTGCTTCAAAGCCATGAGGTAAAGAATGGAATCTTGAGCTTCCAA GCCATTAGAATCGGCCGAAATTCTTCGGTTGGCCCTTACGCTGTAATCCAGAAAGGAAGTACATTGGGAGAAGAAGCAGATGTGCAGCCCTTGCAGAAGA CAGAAGGTGGAAAAGCTGTACTCAAATCTAGCAAGGCTCACAATGTTCAGAAGGGTGCAATGCTGTCTGATAAGGCCACCTACCACTTCATGGGCATCTA CATGGTTGGTCTCCTCAGCACTCTCTCAGCAGCCATTATCTACTTCCTTTACATTTGGCTATCTCAAAAGCCTGCCTCCATTCAACACTTCTCATTTCTC TGCATCTCTGGAGCCTTTCACTGGACTCCATTCACCATCATTGCTTATGCTACAATGATTGCTAATGTCCCATCAAACCCAGCCACCTTTGCAATCTCAG TTGCTATTGTTTACTTGGCTCATGGCCTGATACTCAGCCTCCTCACATGCACTCTGACCCATTTTCTTGCTGAAAAACAAGAGAAAAGGGAATCCCACAT GAAAGCCTGGCTCCGGCATAGAATTACCATTGCCTGCCACCTTAGATTTGCCAAACTCCTGTCAGGAACAGAAGCATTCTGCATTTATTTGCGCCTTTTG GGTGCAAGTGTAGGTCAGCATTGTTCCATCAGGGCTGTCAATCCTGTATCAGACCCAGAGCTCATTACAATTGGTGATGGTGTGCACCTTGGTGACTTCA GTCGGATGATTGCTGGCTTCTATTCATCCAGTGGGTTTACTCAAGGAAAAATTGAAGTGCAGGACAATTCGGTTGTCGGGAGTCAAAGCCTCATCCTCCC TGGTTCGGTTGTTCAAAAGGATGTTATTCTTGGAGCTCTTTCAGTGGCTCCTGCAAATTCAGTTCTTCGACAAGGCGGCGTCTATATTGGATCTCAAACT CCAGTTATGATCAAGAACACCATGCATGCCTTGGATGACAGGATAGAAGAGATGGACTACAAATACAAGAAGATAGTTGGCAATTTAGCTGCAACTTTGG CTGCCAATACTCTGAAGGTTAAAGCAAGGTATTTCCATCGAATTGGTGTTAGTGGGAAGGGATACCTGAAGATTTATGACAACCTGAAAGGATTTCCAGA CCACAAGATATTCCAGGCTGGGAAGAGCTATCCTATTGTAGTCAGGCATAGCAACGGCATGAGTGCTGATGATGATGCAAGAATCGATCTACGTGGAGCA GCGATAAGAATACTTTCAGATGACAATGGAAGCAACTCTTCTTCGCTTCTTGATCTAACATTGAAGACAGGTAAGGCATTATCTGCACGCACTATTGGTG ATTTTGCAACATGGTTAGTTTGTGGACTTCCTGCAAGGGAGCAGCATGTGAAGCGAGCCCCACATATCCGTGATGCAGTTTGGATGTCTCTTCGCAATGC GAATTCTTTTGCTGAGCTACACTACTACTCAAATATCTGCAGGCTCTTCAGGTTTTCGGACGGACAGGAAATGTATGTGAAATTCAAATTGCGGCCTGGT GACGAAAACATAAGTGAGGATTCAGGTAAAGTTGAGCCTATGGGCATTCTCCCACCAGAAACAGGTGCAATTCCACGGGATGAAAAGGATACTCGTCCCT TACTTTTCCTAGCCGAAGATTTCCAAAGCCGTGTAAGTTCTCCAGGAGGCGTTCGCTACATTTTCCAGCTGCAAATCCGACCTGTTCCACATGATGATGC CACTTGTGACATTGCACTTGACTGCACCAAACCATGGGATGAGTCTGAATTCCCTTACATTGATATAGGGGAAGTTCACATTGATCAAAATCTCACCGGT GCAGAATCAGAAGCACTACAGTTTAATCCTTATATTCGATGCCATGAGGTGGATGTGATCCGGGCCACTTCATCCTCGCAAAGTGCTTCAATTGATCATG GTCGTTCATTGATCTATGAAATTTGTCAGCATTTGAGGAATGGAGAACCACTTCCAGAAGCTTGGAGGATCTTCATAGAACAAAGTGATGTTAAAGTGGA CCTTTCAGGCTGTCCAATGGCAGCAGCATTGGAGAAAAAGGACTCAGGAAAAGTTACACTAGCAAGGACATGGTATCAGACCTTATGGGTCATTTTTGCT CAACCATTGCTGCAAACATTTCTTCCATATTTCCTGATGGGGTTGCTCATCTTTGCTCCACTGAACTGGATTCTTCACTTGAAGGAAAGCAAGAAAGTCG CAATGCATTGGTTGCTTCCTTTGGTTTGGGTTTCTTCAGGAGTTCTAGCAGCATTAGCATGTGTTTTGGCCAAGTGGATTCTTGTGGGGAAAAAGAAAGA AGGCCAAACAGTACACATTTGGAGCATAGGAGTCTTCATGGACACTGTGTGGCAAGCTTTCAGAACTGTAGTAGGGGACTACTTCATGGAAATGACTAGA GGGTCTATCTTATTTTTGCTATGGCTAAAGCTCATGGGTTCAGACATTGATTTGGACCAAGGAGCCTACGTAGATAGCATGGGAGCAGCATTGAATCCAG AAATGGTGGAGATTGAGAGAGGTGGTTGTGTAGGAAGAGAAGCTTTACTGTTTGGACATATATATGAAGGTGAAGGAGGGAAAGTTAAGTTTGGCAGGAT AAGAGTTGGAGAAGGTGGATTTGTAGGGAGTAGAGCAATTGCCATGCCTGGTGTTAGAATAGAAATAGGAGGCAATCTTAGTGCTCTTTCTCTTGCCATG AAAGAAGAAATTGTTAGGTCTATGTGA
AA sequence Show only first row Show all	>Potri.003G210701.1 pacid=42787483 polypeptide=Potri.003G210701.1.p locus=Potri.003G210701 ID=Potri.003G210701.1.v4.1 annot-version=v4.1 MDPLVSIEDQFVKLHPCLSVNTRIGIVGGGPSGISAAYALAKLGYQNVTVLEKHHTVGGMCESVDIEGRIYDLGGQVLAKNSAPVIFHLAKEVGSELEEM DSHKLAHIDSSTGKYQDIKVADDYVAVMSLTLELQDKAKDSGRIGVHAVSELAQDLTPTYLESRGFKSVPKSVAYGYTASGYGFVQDMPYAYIHEFTRTS MAGKIRRFKGGYTSLWQKISESLPIEVNCKTDVLAIRRNSDSVRVDVKRNNGEIQEMEFDKIIISGSFPFTNGNTYRFPAENSTESETEVMDLSEVERYF FRKVQTIDYYTTVLKIKGLEDMPVGFYYFGEYMEDPATIGHPVAMQKFYADTDIFLFWSYGNSFDIKRPTVAELAKKVVMSMGAKVEEEVLQRRFKYFPH VGSQEMKDGFYEKLESELQGQRNTYYVGGLMAFELTERNSSYAMDLICKHFANNNSVPMFPYVKSLFSLKSDCWDRNPKELGEGVEFPDLSTLDGYLKHW GTESMTKDKTLYTWIGEDGAVVCQRTYAELHAKASCIARKLLTSRKPVIKPGDRVLLVYVPGLDFIDAFFGCLRAKVLPVPVLPPDPLQRGGQALLKIES IAKSCNAVAILSTLLYHSAVRAGSVKNLISLAGKNGKWPNLPWMHTDSWLKDSKVLAPGNIAYESECQPDDLCFLQFTSGSTGDAKGVMITHGGLIHNVK LMKRIYKSTSKTVLVSWLPQYHDMGLIGGLFTALVSGGSAILFSPMTFIKNPLLWLQIMSKYNATHSAGPNFAFELLIRRLEYADKDKVRNFDLSSLIFL MVAAEPVRQRTLKRFVELTRPFGLSQEVMAPGYGLAENCVFVSCAYGEGKPILVDWQGRVCCGYVEPNGEDIDIRIVDPESNEELKESGKEGEIWISSPS AGIGYWGREELSQSTFRNVLQNHPGRKYTRTGDLGRIIDGKVFITGRIKDLIIVAGRNIYSTDVEKTVESASELLRPGCCAVIGVPEEVLSSKGISLPDC SDQVGLVVIAEVRDAKHVDKDVVENIKTRVAEEHGVTVASIKLIKPRTISKTTSGKIKRFECLKHFTDGTLNTVPDPFFAKRKLLRSFTTGTSKEGLTPR SRFATSPLPTAKFSKKEIVEFLKGLVSEQTGIPIKNISATESLVSYGIDSIGVVRAAQKLSDFLGVPVGAVDIFTATCIADLASFSENLAMKSQPHLMNS QSYQPEPDIDSAEFDTEVSTTRLISVWFFQLLALVYVCAMLSFPAYFSVSAFTSLLSASHMLNEEFPWWNYLIPLALAPLAWILGIISTCISIAFLGNSF LKPNYALAPEVSIWSIHFVKWWALYKAQEISSKVFAEHLRGTVFLNYWFEMLGAKIGSSVLLDTVDITDPSLVSIGDGAVIAEGALLQSHEVKNGILSFQ AIRIGRNSSVGPYAVIQKGSTLGEEADVQPLQKTEGGKAVLKSSKAHNVQKGAMLSDKATYHFMGIYMVGLLSTLSAAIIYFLYIWLSQKPASIQHFSFL CISGAFHWTPFTIIAYATMIANVPSNPATFAISVAIVYLAHGLILSLLTCTLTHFLAEKQEKRESHMKAWLRHRITIACHLRFAKLLSGTEAFCIYLRLL GASVGQHCSIRAVNPVSDPELITIGDGVHLGDFSRMIAGFYSSSGFTQGKIEVQDNSVVGSQSLILPGSVVQKDVILGALSVAPANSVLRQGGVYIGSQT PVMIKNTMHALDDRIEEMDYKYKKIVGNLAATLAANTLKVKARYFHRIGVSGKGYLKIYDNLKGFPDHKIFQAGKSYPIVVRHSNGMSADDDARIDLRGA AIRILSDDNGSNSSSLLDLTLKTGKALSARTIGDFATWLVCGLPAREQHVKRAPHIRDAVWMSLRNANSFAELHYYSNICRLFRFSDGQEMYVKFKLRPG DENISEDSGKVEPMGILPPETGAIPRDEKDTRPLLFLAEDFQSRVSSPGGVRYIFQLQIRPVPHDDATCDIALDCTKPWDESEFPYIDIGEVHIDQNLTG AESEALQFNPYIRCHEVDVIRATSSSQSASIDHGRSLIYEICQHLRNGEPLPEAWRIFIEQSDVKVDLSGCPMAAALEKKDSGKVTLARTWYQTLWVIFA QPLLQTFLPYFLMGLLIFAPLNWILHLKESKKVAMHWLLPLVWVSSGVLAALACVLAKWILVGKKKEGQTVHIWSIGVFMDTVWQAFRTVVGDYFMEMTR GSILFLLWLKLMGSDIDLDQGAYVDSMGAALNPEMVEIERGGCVGREALLFGHIYEGEGGKVKFGRIRVGEGGFVGSRAIAMPGVRIEIGGNLSALSLAM KEEIVRSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20480			AMP-dependent synthetase and l...		Potri.003G210701 [exp]	0	1
AT1G20480			AMP-dependent synthetase and l...		Potri.003G210600 [exp]	1.41	0.9392
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.010G153800 [exp]	14.79	0.7774
AT5G27350		SFP1	Major facilitator superfamily ...		Potri.001G226600 [exp]	19.59	0.6425
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G194200 [exp]	27.74	0.6366	CESA2.6
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024900 [exp]	33.94	0.7496
					Potri.005G043600 [exp]	40.09	0.5988
AT3G06880			Transducin/WD40 repeat-like su...		Potri.002G021600 [exp]	40.21	0.6762
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Potri.005G069800 [exp]	47.95	0.6404
					Potri.013G135900 [exp]	54.95	0.5941
AT2G21840			Cysteine/Histidine-rich C1 dom...		Potri.019G020100 [exp]	70.35	0.6756

Compare expression of checked genes

Potri.003G210701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.