Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20790 488 / 3e-174 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085501 [exp] 686 / 0 AT3G20790 488 / 3e-174 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031242 [exp] 525 / 0 AT3G20790 507 / 2e-180 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10031814 [exp] 446 / 7e-158 AT3G20790 423 / 3e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01408 [poplar] [flax] GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold CL0139 [poplar] [flax] GADPH_aa-bio_dh PF02894 [poplar] [flax] GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta domain
Representative CDS sequence Show only first row Show all	>Potri.003G210900.1 pacid=42786314 polypeptide=Potri.003G210900.1.p locus=Potri.003G210900 ID=Potri.003G210900.1.v4.1 annot-version=v4.1 ATGGCAAACCAACTTCCCCAGATATCCGTTCTTGGAGCTGGCATCTTTGTCAAGACTCAATACATTCCAAGACTAGCTGAGATCTCTCATCTTTTTGTTC TTAAATCCATCTGGAGTCGCTCTGAGGAATCTGCAAGAGAAGCAGTGGAGGTAGCAAAGGAGCATTTTCCTGGTGTGGAATGCAAGTGGGGTGATAAGGG TCTTGATGAGATCATTCAAGATGAGTCAATTCTTGGTGTTGCTGTGGTTCTTGCTGCACAATATCAGGTTGATATGTCACTAAAGCTACTAAAGGCAGGG AAGCATGTCCTCCAAGAGAAACCAGCGGCATCTTCTATTAGTGAAATAGAAACCAGCCTGTCAAGCTACAAATCTATCTGTGCAAATTCACCTGGTTATC CAATTTGGGCTGTGGCAGAGAACTATAGGTTTGAACCTGCACTTGTAGAGAGCAAGAAATTATTGGCTGATATTGGGAAAATGATGAGCGTCCAACTTAT AATTGAAGCATCAATGAATAGTGCAAACCCTTACTTCTCAAGCTCTTGGCGGCGGAATTACACGGGGGGTTTCATTCTAGATATGGGAGTGCACTTCATT GCAGGACTGAGAATGCTTGTTGGATGTGAGGTGACATCAGTGTCAGCTATGACCTCTCATGTGGATACAACTTTGCCTCCACCTGATAACATATCCTCAG TTTTTCACCTGGAGAATGGATGTTCTGGAGTTTTTGCAATGGTTGTGTCCTCCAAAACACCCAAGATATTATGGAGAATTGTTGGCATAAACGGAACAGT GGAAATTGGGCGTGGAAACCAAGGCGGACAGCATGGTTACATGATTTCTTTTTATGGAGCTGGTGGACACTGTAAAAGCAACTTCTACCCATTTAGTGGA GTGACCGCTGAACTGAAGGCATTTTTACATGACATTTCACAGGCCAACCTTAAGAAGGGAAGTAGCTACGAAGTTGAGCCTCGACTCTCTTTTATTGAAG GAGCAAGAGATGTTGCAGTTTTAGACGCAATGCTTGAATCTGGAAACAAGAATGGAGCACTAGTTCAGGTGAAAAAGTTTTAA
AA sequence Show only first row Show all	>Potri.003G210900.1 pacid=42786314 polypeptide=Potri.003G210900.1.p locus=Potri.003G210900 ID=Potri.003G210900.1.v4.1 annot-version=v4.1 MANQLPQISVLGAGIFVKTQYIPRLAEISHLFVLKSIWSRSEESAREAVEVAKEHFPGVECKWGDKGLDEIIQDESILGVAVVLAAQYQVDMSLKLLKAG KHVLQEKPAASSISEIETSLSSYKSICANSPGYPIWAVAENYRFEPALVESKKLLADIGKMMSVQLIIEASMNSANPYFSSSWRRNYTGGFILDMGVHFI AGLRMLVGCEVTSVSAMTSHVDTTLPPPDNISSVFHLENGCSGVFAMVVSSKTPKILWRIVGINGTVEIGRGNQGGQHGYMISFYGAGGHCKSNFYPFSG VTAELKAFLHDISQANLKKGSSYEVEPRLSFIEGARDVAVLDAMLESGNKNGALVQVKKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20790			NAD(P)-binding Rossmann-fold s...		Potri.003G210900 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041900 [exp]	13.78	0.9707
AT5G46940			Plant invertase/pectin methyle...		Potri.003G086500 [exp]	19.39	0.9705
AT2G39210			Major facilitator superfamily ...		Potri.006G122400 [exp]	23.74	0.9703
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.006G188400 [exp]	27.12	0.9702
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Potri.004G000400 [exp]	33.76	0.9701
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.006G055600 [exp]	41.56	0.9697	Pt-ZOG1.15
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.004G148900 [exp]	43.93	0.9679
					Potri.006G260911 [exp]	46.43	0.9679
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.004G148600 [exp]	48.24	0.9678
					Potri.018G082700 [exp]	49.95	0.9677

Compare expression of checked genes

Potri.003G210900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.