Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20780 1122 / 0 RHL3, HYP6, BIN3, ATTOP6B ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085401 [exp] 896 / 0 AT3G20780 798 / 0.0 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031812 [exp] 1040 / 0 AT3G20780 1016 / 0.0 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1) Lus10031241 [exp] 1037 / 0 AT3G20780 1014 / 0.0 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1) Lus10031813 [exp] 277 / 1e-89 AT3G20780 279 / 3e-91 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0329 [poplar] [flax] S5 PF09239 [poplar] [flax] Topo-VIb_trans Topoisomerase VI B subunit, transducer
Representative CDS sequence Show only first row Show all	>Potri.003G211000.1 pacid=42787431 polypeptide=Potri.003G211000.1.p locus=Potri.003G211000 ID=Potri.003G211000.1.v4.1 annot-version=v4.1 ATGGAAATCGGAGGAAGCAGTGAAAGCCAAAATGAAACAAAGAAAGGCAAATCAAAGACTCCAAGGAAACCCAAAGAAAGCCTTCTCAAACAAAAATCTC CAGCTGAATTTTTCGCAGAGAACAAGAACATTGCCGGCTTTGATAATCCAGGGAAATCTCTTTATACTACAGTGAGAGAACTTGTAGAAAATTCGCTTGA TTCGGCGGAAGCGATATCGGAACTTCCTGTCGTAGAAATTACGATTGAGGAGATAGGGAAAAGTAAGTTTAATTCAATGATTGGTCTTGTTGATCGAGAG CGTGTTGATGCGCAACTTTATGATGATTACGAGACAGCTAAGGCTCGTGAGAAAAGATTGGCGAAGGAAGCTCGTGCTCAAGAAGTGCAAGCGAAGAATG CTTCTCTTGGGAAGAAAGTAAAAGAACAATCAACTATGAAGGGCATGAAGGGTCGAGGTGAGGCCTCATTTTACAGAGTCACATGCAAGGACAATGGAAA AGGAATGCCACATGATGATATCCCAAATATGTTCGGACGAGTTTTGTCCGGGACAAAGTATGGTCTCAAGCAGACTCGTGGCAAGTTTGGTCTTGGTGCC AAAATGGCATTGATATGGTCTAAAATGAGTACAGGGCTTCCTATAGAGATCTCGTCATCAATGAAGGCCCAAAGCTATATTTCATTCTGCAGGCTGGATA TAGATATTCATCGGAACATTCCTCACATTCATTTACATGAAAAACGGAACAATGATGATTGTTGGCATGGAGCTGAAATTCAAGTTGTTATTGAGGGAAA TTGGACAACTTATCGTTCCAAGATATTGCATTACATGCGGCAAATGGCTGTTATCACTCCTTATGCCCAATTTCTTTTCAGATTTATATCAGATGCACCA GATAAGAATGTTACTATAAAATTTGCACGGAGAACTGATGTGATGCCTCCAGTTCCTCTCGAGACAAAACACCATCCATCATCTGTTGATTTACTGCTGA TCAAACGCCTCATTGCGGAAACTTCAAAACAGAATCTTTTGCAGTTTCTACAGCATGAATTTGTAAACATAGGAAAGTCACTTGCTGAACGATTAATTGG GGAAATGGGTCCAGAATTTAGCCCAAAAATGGTTGTAAAATCTCTGACTGATCAGCAGATAGTTCGCATCAATCAGTTGTTTCGCCAAGCCAAGTTTGAC GACCCTACTGGTGATTGTCTTAGTCCTGCAGGGGAATACAATCTTCGTCTTGGAATTATAAAGGAGCTGCATCCAGATATGGTTGCAACTTATTCAGGCA GTGCTCAAGTATTTGAGGGTCACCCATTTATTGTAGAAGCTGGTGTCAGTGTGGGTGGAAAGGATGTTAAGCAAGGCTTGAATATATTTCGATTTGCAAA CCGCATTCCACTTCTATTTGAGCAAGGTGCAGATGTTGTCACCAGGACTGCACTTAAGAGAATCAATTGGGGGAGTTACAAGATTAACCAGACGCAGGAC AAAATTGGTGTCTTTGTCAGTGTCGTGAGCACAAAAATCCCCTTTAAAGGGACTGGCAAGGAGTATATTGGAGATGATATTAATGAGATAGCTACAGCTG TGAAGTCTGCCATTCAGCAATGCTGCATCCAGCTAAAATCCAAAATTATAAAGAAAATGCTGGCCCGTGAGCAACAGGAGAGAAAACGAAATCTAAGCAG GTATATTCCTGATGCTACCAATGCTGTATATGATGTTTTGAAATACATGTCACAGTCACATGCATCAAAGAAGAAGCGTTACAGCGGTGAGGAAGCGGAA ATACTTAGCAACATAACAGCTAATTTGATAACAAAAGAGACAATCAAGGAAAAGCTTGCTGAGCATGTTGAAAAGGTGGACTATGAAATGGCATTGGAAT ACGCGACACAAAGTGGAGTGACCGAAGAACCAAGAGAAGATATATTCATCCAAACCCTTGATCCTGAAAATAAGTTCATCGAATTCCAAAGTCCCATCTT TGTTTTCAGACTAGTATGTTAG
AA sequence Show only first row Show all	>Potri.003G211000.1 pacid=42787431 polypeptide=Potri.003G211000.1.p locus=Potri.003G211000 ID=Potri.003G211000.1.v4.1 annot-version=v4.1 MEIGGSSESQNETKKGKSKTPRKPKESLLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAEAISELPVVEITIEEIGKSKFNSMIGLVDRE RVDAQLYDDYETAKAREKRLAKEARAQEVQAKNASLGKKVKEQSTMKGMKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGA KMALIWSKMSTGLPIEISSSMKAQSYISFCRLDIDIHRNIPHIHLHEKRNNDDCWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFISDAP DKNVTIKFARRTDVMPPVPLETKHHPSSVDLLLIKRLIAETSKQNLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMVVKSLTDQQIVRINQLFRQAKFD DPTGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGADVVTRTALKRINWGSYKINQTQD KIGVFVSVVSTKIPFKGTGKEYIGDDINEIATAVKSAIQQCCIQLKSKIIKKMLAREQQERKRNLSRYIPDATNAVYDVLKYMSQSHASKKKRYSGEEAE ILSNITANLITKETIKEKLAEHVEKVDYEMALEYATQSGVTEEPREDIFIQTLDPENKFIEFQSPIFVFRLVC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20780		RHL3, HYP6, BIN...	ROOT HAIRLESS 3, ELONGATED HYP...		Potri.003G211000 [exp]	0	1
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.017G144900 [exp]	4.35	0.7898
AT2G04660		APC2	anaphase-promoting complex/cyc...		Potri.008G089600 [exp]	31.55	0.7456
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.001G177700 [exp]	42.41	0.7562
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.018G049301 [exp]	54.09	0.6803
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.018G049500 [exp]	81.11	0.7157
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.013G011900 [exp]	127.49	0.6725
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Potri.017G110400 [exp]	137.21	0.7043
AT4G39690			unknown protein		Potri.007G087100 [exp]	172.64	0.6776
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Potri.009G005900 [exp]	246.93	0.6664
AT5G06740			Concanavalin A-like lectin pro...		Potri.018G028800 [exp]	262.23	0.6629

Compare expression of checked genes

Potri.003G211000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.