Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 569 / 0 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 389 / 8e-123 lectin protein kinase family protein (.1) AT4G32300 308 / 2e-92 SD2-5 S-domain-2 5 (.1) AT2G19130 297 / 3e-88 S-locus lectin protein kinase family protein (.1) AT4G00340 292 / 2e-86 RLK4 receptor-like protein kinase 4 (.1) AT5G24080 282 / 2e-86 Protein kinase superfamily protein (.1) AT5G35370 289 / 7e-85 S-locus lectin protein kinase family protein (.1) AT1G11280 262 / 1e-75 S-locus lectin protein kinase family protein (.1.2.3.4) AT4G21380 258 / 8e-74 ARK3 receptor kinase 3 (.1) AT1G61550 256 / 1e-73 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G211800 [exp] 1518 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084701 [exp] 1508 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085150 [exp] 1466 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085000 [exp] 1444 / 0 AT5G60900 559 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084900 [exp] 1349 / 0 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211700 [exp] 1331 / 0 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1) Potri.T085100 [exp] 1323 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084601 [exp] 1284 / 0 AT5G60900 519 / 3e-174 receptor-like protein kinase 1 (.1) Potri.T084800 [exp] 1274 / 0 AT5G60900 485 / 3e-161 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024195 [exp] 846 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 827 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 810 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 661 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 629 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 616 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 490 / 2e-161 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 469 / 3e-153 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 413 / 2e-136 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1) Lus10006052 [exp] 392 / 9e-124 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.003G211366.1 pacid=42786384 polypeptide=Potri.003G211366.1.p locus=Potri.003G211366 ID=Potri.003G211366.1.v4.1 annot-version=v4.1 ATGCAATGTCTTAAAAAACAGTATCTTCACATCATGGATTTTCAACTACCATATTGTTTTTTCTTCCTTCTTCTTCTGCTGCTGCCATTTTCTAGCAATG GTCAGGCTCACAGCAACATATCTTTGGGCTTATCTCTCACTGCTGCAAGTGATAACCTTCCTTGGACTTCACCATCTGGGGAATTTGCTTTTGGATTCCA ACAAGTTGGTGATGCTGGCTCCCTACTTGCCATATGGTTCAACAAAATACCCGAAAGAACCATAGTCTGGTCAGCTAATAGAAATGATCTGGTTCAGGGG GGATCAAGAGTACAACTTACGGAAGATGGTGAGTTGGTTCTAAATGATCAATCAGGCAGAACAATATGGAGTCCAGTTTTTGGTGGAAGTGGAGCCGCCT ATGCAGCCATGCTTGACACGGGAAACTTCGTGCTAGCAAGCCAAGCTGGTGCCAATTTGTGGCAGAGTTTTGATGAACCAACAGATACACTGTTGCCCAC ACAAAATCTGAATTCAGGTGCTCAACTAATTGCTCCCTACCTGGAAAAGAATTATTCAGAAGGAAGATACAAGTTCATTCTACAAGAAGACGGGAATCTC GTCCTGTACACAACACGTTATCCATTAACTACAGTAAATTTTGCTTATTGGTCAACCCAGGATTCTATAGGTAGCGGTTATCAGGTGATCTTTAACCAGT CTGGCCATATGTACCTTGTAGCTAGAAATGGTACTGTACTTAATCCTGTATTCTCTAATTCAGTATCAACGCAAGATCTCTACTTGAGGGCAACCCTGGA CTATGATGGAGTTCTTAGGCAATATGTTTATCCAAAGACTGATTCCAGTAGCAGAAGCAGGGCTATGGCCTGGACGACTTTGTCAAACTCCATACCATCA AATATCTGCTTGAGAATTGCGGGACAACAAGGCGGTGGAGCTTGCGGTTTCAACAGCTATTGCAGATTAGGAGAAGACCAAAGACCAAGTTGCAAGTGTC CTCCTGGTTACACTTTCTTTGATCCAAATGATGAGAGGAAGGGATGCAAGAAAGACTTTATTTCACAGGATTGTGACCATCCATCGCAAGAAATAGATAG CTTTGAGATCAAGGAAATGCCTAACACAAACTGGCCATTTAATGATTATGAAATGTTTGGTTCAGAGGACGAGGATTGGTGCAGACAGGCTTGCTTAAGT GACTGTTATTGTGCTGTTGCCATTTTTAACACTGCTGGACAATGTTGGATGAAGAGAGTCCCTCTCTCCAATGGGGTAACAGATCCAAGTGTTGGTGGAA AAGCCCTGATAAAAGTAAGGACAGGCAACTCGACTGCAGGTTCAAGTGCAAAGAAGTGTGATAGATCGAATTTGATCACAACAGGCTCGGTGCTTTTAGG TAGCTCCATCTTTCTAATTGTTCTCTCACTGCTAGGGATCTATGTGTTCTTTTCTCGATGGAACCGACAGCAACAAAAAATGACACCGCAACACCGTCTC ATGCCAGATATGAATATGCAGAATTTCACTTACAGTGAGCTCGAAAGAGCTACAGGAGGATTCAAGGAAGAACTTGGTAGCGGTGCCTTTGGAACTGTTT ACAAAGGGGTACTAGCGAACGAAGACAAACCACTCATTGCAGTGAAGAAGTTAGATAAGATGGCCGGAGAGGGCGACAAAGAATTCAATACAGAAGTGAA AGTTATTGGAAGAACAAATCACAAGAATTTGGTTCAACTTGTTGGATTCTGTAACGAAGGGCAACATCGCCTTCTGGTCTACGAATACATGAGCAATGGC TCTTTGGCCAATTTTCTCTTTGGAGATTCAAGGCCTAACTGGTACCGAAGAATGCAAATTGCTTTCGATATAGCCAGAGGGCTCCTTTACCTCCACGAAG AATGCAGCTCCCAGATAATCCATTGTGATATCAAGCCTCAAAATATCCTCCTCGACAAATCTTTTAATGCAAGGATTTCTGATTTCGGACTAGCCAAGCT GTTGAAGACAGACCAAACTAAAACAACTACAGCAATCAGGGGTACCAAAGGGTATGTAGCTCCTGAATGGTTCAAGAACCTGCCTGTCACAACCAAAGTA GATACCTACAGCTTTGGCATTCTTTTGCTGGAGCTAGTATGCTGTAGAAAGAACTTTGATATTGATAAGAAAGAAGGTCAGATAGTTCTTGCAGACTGGG CATGTGATTGCCTTAAAGAAGGAAAGTTAGACCTTTTAGTAGAAGAAGATGAAGAGGCAACAGAAGACATGAAAACGGTGGAGAGGTTTGTGATGGTTGC AATTTGGTGCATTCAAGATGATCCATCTGTAAGACCTGGAATGAAGAAAGTTGTGCAGATGCTAGAAGGAGCTGTTCAAGTCTCTATTCCTCCTGATTTT TCATCATTTATCAGCATTCAAGATGATTTTTCATCATTCACCTAA
AA sequence Show only first row Show all	>Potri.003G211366.1 pacid=42786384 polypeptide=Potri.003G211366.1.p locus=Potri.003G211366 ID=Potri.003G211366.1.v4.1 annot-version=v4.1 MQCLKKQYLHIMDFQLPYCFFFLLLLLLPFSSNGQAHSNISLGLSLTAASDNLPWTSPSGEFAFGFQQVGDAGSLLAIWFNKIPERTIVWSANRNDLVQG GSRVQLTEDGELVLNDQSGRTIWSPVFGGSGAAYAAMLDTGNFVLASQAGANLWQSFDEPTDTLLPTQNLNSGAQLIAPYLEKNYSEGRYKFILQEDGNL VLYTTRYPLTTVNFAYWSTQDSIGSGYQVIFNQSGHMYLVARNGTVLNPVFSNSVSTQDLYLRATLDYDGVLRQYVYPKTDSSSRSRAMAWTTLSNSIPS NICLRIAGQQGGGACGFNSYCRLGEDQRPSCKCPPGYTFFDPNDERKGCKKDFISQDCDHPSQEIDSFEIKEMPNTNWPFNDYEMFGSEDEDWCRQACLS DCYCAVAIFNTAGQCWMKRVPLSNGVTDPSVGGKALIKVRTGNSTAGSSAKKCDRSNLITTGSVLLGSSIFLIVLSLLGIYVFFSRWNRQQQKMTPQHRL MPDMNMQNFTYSELERATGGFKEELGSGAFGTVYKGVLANEDKPLIAVKKLDKMAGEGDKEFNTEVKVIGRTNHKNLVQLVGFCNEGQHRLLVYEYMSNG SLANFLFGDSRPNWYRRMQIAFDIARGLLYLHEECSSQIIHCDIKPQNILLDKSFNARISDFGLAKLLKTDQTKTTTAIRGTKGYVAPEWFKNLPVTTKV DTYSFGILLLELVCCRKNFDIDKKEGQIVLADWACDCLKEGKLDLLVEEDEEATEDMKTVERFVMVAIWCIQDDPSVRPGMKKVVQMLEGAVQVSIPPDF SSFISIQDDFSSFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211366 [exp]	0	1
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.001G080900 [exp]	3.46	0.9700
AT4G33050		EDA39	embryo sac development arrest ...		Potri.018G061901 [exp]	4.89	0.9670
AT5G51160			Ankyrin repeat family protein ...		Potri.006G223800 [exp]	9.16	0.9519
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117900 [exp]	9.16	0.9431
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.011G007800 [exp]	13.85	0.9548	Pt-WRKY42.1
					Potri.002G247600 [exp]	13.96	0.9501
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.005G215700 [exp]	14.96	0.9542
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G124400 [exp]	17.17	0.9548
AT4G23220		CRK14	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029800 [exp]	17.23	0.9439
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.016G003000 [exp]	17.74	0.9539

Compare expression of checked genes

Potri.003G211366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.