Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 527 / 4e-177 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 342 / 4e-105 lectin protein kinase family protein (.1) AT4G32300 288 / 7e-85 SD2-5 S-domain-2 5 (.1) AT2G19130 285 / 4e-84 S-locus lectin protein kinase family protein (.1) AT4G00340 285 / 8e-84 RLK4 receptor-like protein kinase 4 (.1) AT1G11280 268 / 6e-78 S-locus lectin protein kinase family protein (.1.2.3.4) AT5G35370 268 / 2e-77 S-locus lectin protein kinase family protein (.1) AT5G24080 250 / 3e-74 Protein kinase superfamily protein (.1) AT4G21380 248 / 2e-70 ARK3 receptor kinase 3 (.1) AT1G61490 246 / 5e-70 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T084601 [exp] 1523 / 0 AT5G60900 519 / 3e-174 receptor-like protein kinase 1 (.1) Potri.T085100 [exp] 1474 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084900 [exp] 1469 / 0 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084800 [exp] 1438 / 0 AT5G60900 485 / 3e-161 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 1346 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084701 [exp] 1336 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211366 [exp] 1317 / 0 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085000 [exp] 1290 / 0 AT5G60900 559 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085150 [exp] 1284 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024195 [exp] 821 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 798 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 785 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 657 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 612 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 575 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 490 / 2e-161 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 464 / 1e-151 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 386 / 4e-126 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1) Lus10006052 [exp] 363 / 7e-113 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.003G211700.1 pacid=42784620 polypeptide=Potri.003G211700.1.p locus=Potri.003G211700 ID=Potri.003G211700.1.v4.1 annot-version=v4.1 ATGCAAGGTCTTAATATACAGTATCTTCACATCATGGATTTTCAACTACCATATTGTTTTTTCTTCCTTCTTCTTCTGCTGCTGCCATTTTCTGGCAATG GTCAGGCTCACAGCAACATATCTTCGGGCTTATTTCTCACTGCTGCAAGTGATAACCTTCCTTGGACTTCACCATCTGGGGAATTTGCTTTTGGATTCCA ACAAGTTGGTGATGCTGGCTACCTACTTGCCATATGGTTCAACAAAATACCCGAAAGAACCATAGTCTGGTCAGCTAATAGAAATGATCTAGTTCAGGGG GGATCAAAAGTACAACTTACCAGAGATGGTGAGTTGGTTCTAAATGATCAATCAGGCAGAACAATATGGAGTCCAGTTTTTGGTGGAAGTGGAGCCGCCT ATGCAGCCATGCTTGACACGGGAAACTTCGTGGTAGCAAGCCAAGCTGGTGCCAATTTGTGGCAGAGTTTTGATGAACCAACAGACACACTGTTGCCCAC ACAAAATCTGAATTTAGGTGCTCAACTAATTGCTCCCTACCTGGAAAAGAATTATTCAGATGGAAGATTCAAGTTCATTCTACAAGCTGACAGCAATCTC GTACTGTACACAACACGTTATCCAACAACTACCTCAAATGTTGCTTATTGGTCTGCCCAAATTTCTACTGGAAGCGGTTATAGGGTGATCTTTAACCAGT CTGGCTATATGTACCTCGCAGACCAAAATGGCAATACGCTTAATTCGGTATTCTCTAATTCAGTATCAATGCAAGATTTCTACTTGAGGGCAACCCTGGA CTATGATGGAGTTTTTAGGCAATATGCTTATCCAAAGACTGCTTCCAGTAGCACAAGGTGGGCTATGGCCTGGACGACTTTGCCAAACTTCATACCCTCA AATATCTGCGTGGTAATTAGGGGACCAGTAGGCAGTGGAGCTTGCGGTTTCAACAGCTATTGCATATTAGGAGATGACCAAAGACCAAGATGCAAGTGTC CTCCTGGTTACACTTTCTTTGATCCAAATGATGAGAGGAAGGGATGCAAGAAAAACTTTATTTCACAGGATTGTGACCATCCATCGCAAGAAATAGATAA CTTTATGATCTGGGATATGCTTAACAAAAACTTTCCATTTACTGATTATGAAGATTTTTTTTCAGTGGACGAGGATTGGTGCAGACAAGCTTGCTTGAGT GACTGCTATTGTGCTGTTGCCACTTATAACAGTGGACACTGTTGGAAGAAGAGAGGCCCTCTCTCGAATGGGGTAACAGATCCAAGTATTGGTGATAAAG CCCTGATGAAAGTAAGGAAAGGCAACCGGACTGCAGGTTCAAGTGCAAAGAAGAGTGATCGATCAATTTTGATCACAACAGGATCGGTGCTTTTAGGTAG CTCCATCTTTCTAATTGTTCTTTCTCTGCTAGGAATCTACGTGTTCTTTACTCGATGGAACCAACAAAAACAAAAGATGGTACCGCAACTCCATGTCATG CCAGAAATGAATCTGCAGAATTTTACTTACAATGAGCTGGAAACAGCTACAGGAGGATTCAAGGAAGAACTCGGTAGGGGTGCTTTTGGAATTGTTTACA GAGGGGCACTAGCCAACGAAGACAAACCGCTCATCGCAGTAAAGAAATTAGAAAAGATGGCCGGGGAGGGCGACACAGAATTCAATACAGAAGTGAAAGT TATTGGCAGAACAAATCACAAGAATCTGGTTCAACTTGTTGGATTCTGTAACGAAGGGGAAAATCGCCTTCTGGTCTACGAGTACATGAGCAGTGGCTCC TTGTCAAACTACATATTTGGATATTCAAGGCCTAGTTGGCACCGAAGAATGCAAATTGCTTTCGGTGTAGCCAGAGGGCTACTTTACCTCCATGAAGAAT GCAGCTCCCAGATAATCCATTGTGATATCAAGCCTCAAAATATCCTCCTCGACGAATCTCTTAACGCCAGGATTTCAGATTTCGGACTAGCCAAGCTGTT GAAGACGGACCAAACCAAAACAACGACAGGAATCAGGGGTACCAAAGGGTATGTAGCTCCTGAATGGTTCAAGAACCTGCCTGTCACAACCAAAGTAGAT ACCTACAGCTTTGGCATTCTCTTGCTGGAGCTAGTTTGCTGCAGAAAGAACTTTGAGATTAATGCGATGCAAGAAGATCAGATAGTTCTTGCAGACTGGG CATGTGATTGCCTTAAAGAAGGAAAGTTGAACCTTTTAGTAGAAGAAGATGAAGAGGCAATGGAAGACATGAAAAGGGTAGAGAGGTTTGTGATGGTTGC AATTTGGTGCATTCAGGAAGATCCATCTTTAAGACCTGGAATGAAGAAAGTTGTGCAGATGTTAGAAGGAAGTGTTCAAGTCTCTGTTCCTCCTGATCCT TCATCATTTATCAGCACAATCTAA
AA sequence Show only first row Show all	>Potri.003G211700.1 pacid=42784620 polypeptide=Potri.003G211700.1.p locus=Potri.003G211700 ID=Potri.003G211700.1.v4.1 annot-version=v4.1 MQGLNIQYLHIMDFQLPYCFFFLLLLLLPFSGNGQAHSNISSGLFLTAASDNLPWTSPSGEFAFGFQQVGDAGYLLAIWFNKIPERTIVWSANRNDLVQG GSKVQLTRDGELVLNDQSGRTIWSPVFGGSGAAYAAMLDTGNFVVASQAGANLWQSFDEPTDTLLPTQNLNLGAQLIAPYLEKNYSDGRFKFILQADSNL VLYTTRYPTTTSNVAYWSAQISTGSGYRVIFNQSGYMYLADQNGNTLNSVFSNSVSMQDFYLRATLDYDGVFRQYAYPKTASSSTRWAMAWTTLPNFIPS NICVVIRGPVGSGACGFNSYCILGDDQRPRCKCPPGYTFFDPNDERKGCKKNFISQDCDHPSQEIDNFMIWDMLNKNFPFTDYEDFFSVDEDWCRQACLS DCYCAVATYNSGHCWKKRGPLSNGVTDPSIGDKALMKVRKGNRTAGSSAKKSDRSILITTGSVLLGSSIFLIVLSLLGIYVFFTRWNQQKQKMVPQLHVM PEMNLQNFTYNELETATGGFKEELGRGAFGIVYRGALANEDKPLIAVKKLEKMAGEGDTEFNTEVKVIGRTNHKNLVQLVGFCNEGENRLLVYEYMSSGS LSNYIFGYSRPSWHRRMQIAFGVARGLLYLHEECSSQIIHCDIKPQNILLDESLNARISDFGLAKLLKTDQTKTTTGIRGTKGYVAPEWFKNLPVTTKVD TYSFGILLLELVCCRKNFEINAMQEDQIVLADWACDCLKEGKLNLLVEEDEEAMEDMKRVERFVMVAIWCIQEDPSLRPGMKKVVQMLEGSVQVSVPPDP SSFISTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211700 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025800 [exp]	1.41	0.8959
					Potri.013G045454 [exp]	3.87	0.8309
AT2G24720		ATGLR2.2	glutamate receptor 2.2 (.1)		Potri.018G096300 [exp]	8.71	0.8710
AT5G27020			unknown protein		Potri.005G021500 [exp]	9.48	0.8087
AT3G14280			unknown protein		Potri.003G072400 [exp]	10.48	0.8646
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013100 [exp]	11.74	0.8745
AT1G68710			ATPase E1-E2 type family prote...		Potri.010G132700 [exp]	11.74	0.8623
AT1G14780			MAC/Perforin domain-containing...		Potri.010G104600 [exp]	15.71	0.8193
AT2G23770			protein kinase family protein ...		Potri.010G078700 [exp]	17.43	0.8519
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187400 [exp]	17.74	0.8590

Compare expression of checked genes

Potri.003G211700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.