Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 508 / 4e-174 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 308 / 8e-96 lectin protein kinase family protein (.1) AT5G24080 289 / 3e-92 Protein kinase superfamily protein (.1) AT4G32300 285 / 4e-87 SD2-5 S-domain-2 5 (.1) AT2G19130 269 / 4e-81 S-locus lectin protein kinase family protein (.1) AT4G00340 259 / 1e-77 RLK4 receptor-like protein kinase 4 (.1) AT5G35370 248 / 4e-73 S-locus lectin protein kinase family protein (.1) AT3G25560 240 / 1e-71 NIK2 NSP-interacting kinase 2 (.1.2.3) AT2G23950 238 / 7e-71 Leucine-rich repeat protein kinase family protein (.1) AT1G60800 238 / 8e-71 NIK3 NSP-interacting kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T084200 [exp] 1020 / 0 AT5G60900 573 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084401 [exp] 770 / 0 AT5G60900 641 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084300 [exp] 770 / 0 AT5G60900 645 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084351 [exp] 681 / 0 AT5G60900 419 / 4e-141 receptor-like protein kinase 1 (.1) Potri.T084500 [exp] 640 / 0 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G212000 [exp] 637 / 0 AT5G60900 655 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014600 [exp] 600 / 0 AT5G60900 666 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014100 [exp] 600 / 0 AT5G60900 669 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G228200 [exp] 558 / 0 AT5G60900 601 / 0.0 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031230 [exp] 571 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 487 / 1e-164 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 486 / 1e-164 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 471 / 1e-158 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 469 / 1e-157 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 464 / 4e-156 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 384 / 4e-129 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 363 / 2e-116 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 341 / 4e-108 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10006052 [exp] 316 / 2e-98 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.003G211932.1 pacid=42785047 polypeptide=Potri.003G211932.1.p locus=Potri.003G211932 ID=Potri.003G211932.1.v4.1 annot-version=v4.1 ATGGGAGCGGACTTGGGTAGTGGATCGTGTGGATACAACAGCATCTGCAGCCTAAGTGTTGATCGAAGGCCCGATTGTACTTGTCCACAAGAATTTTCTT TGCTTGATCAGAATGACAAGCATGGAAGCTGCATACCAAATTTCGAAATAAGCTGCGAAGATAATGGAAAAAATTCCTCAGAAGATCTGTATGATTTTGT TGAGCTAAGATATGTTGATTATCCATCAGGTGATGCAGAACATTTACAACCTCAAAATGAAGAGCAGTGCAGAAAAGCTTGCTTGAATGACTGTCTGTGT GGGGCTGTCATATTTTTAGGCTACAACTGCTGGAAGAAGAAGTTACCACTTTCGAATGGAAGAGTTGACAGTGGTTTTAACGGGAAGACTTTGATCAAAT TTAAGAAAGGTCATATCCCTCCCGGGAATCCTGGTCTTCAGATTCCTGAAACGAAGACGGAAAGGGACATTAAGGTCATCACAGGAACAGTGCTCTTGGT TAGCTCTGTATTTGTCAACTTTATATTGATCAGTACATTATGTTTCTGTTCTTCCTTCATTTACCGCAACAAAGTAGCAAATGTTCGAGAAGAAAACAAT GTGGAGTCAAACTTGCGTTCATTTACATACAAAGAGCTCACAGAAGCTACAGAAGGCTTCAAGGATGAACTGGGGAGAGGAGCTTTTGGTGGTGTTTACA AGGGTGCGATAAAAACAGGTTTTACTAATTTTATTGCTGTGAAGAAGTTAGATGGCGTGGTTGAACATGGCGAGAAGGAATTCAAAACCGAAGTGAATGT GATCGGTCAGACGCATCACAAGAATTTGGTCCGATTGTTAGGATTTTGTGACGAGGGGCAGCATCGTTTGTTGGTGTATGAGTTCTTGAGTAATGGCACT CTAGCCGATTTTCTTTTTGGAAGCTTAAGGCCTAGTTGGAAGCAAAGAACTCAGATTGCCTTCGGCATTGCAAGAGGACTCTTGTACCTACACGAAGAAT GTAGCACCCAAATCATTCACTGTGACATAAAGCCGCAGAACATTCTTATTGATGACTACTACAATGCTCGGATATCAGATTTTGGATTGGCAAAACTTTT GGCGATTAATCAGAGCCAAACCAAAACTGCCATTCGAGGAACAAAAGGATATGTTGCTCCTGAATGGTTCAGGAACACACCAGTCACTGTGAAGGTTGAT GTCTATAGCTTTGGTGTCTTGCTGCTAGAGATCATCTGTTGTCGGAGAAGTGTAGATCTGGAGATCAGTGGAACTGGAGCTATATTGATCGACTGGGCTT ATGACTGCTATAGGCACGGAACGCTTGACGCTTTGATTGAAGATGACATGGAGGCCATGAATGACGTATCAACACTAGAGGGGGCTATGAAGGTTGCAAT TTGGTGCATTCAAGAGGTGCCATCTCTTAGACCCACCATGAGGAAGGTGACACAGATGCTTGAAGGAGTTGTTGAAGTGCCCGCTCCCCCGAATCCGTTC CCGTTCAGTGAAATTAGCTGCTCCTGA
AA sequence Show only first row Show all	>Potri.003G211932.1 pacid=42785047 polypeptide=Potri.003G211932.1.p locus=Potri.003G211932 ID=Potri.003G211932.1.v4.1 annot-version=v4.1 MGADLGSGSCGYNSICSLSVDRRPDCTCPQEFSLLDQNDKHGSCIPNFEISCEDNGKNSSEDLYDFVELRYVDYPSGDAEHLQPQNEEQCRKACLNDCLC GAVIFLGYNCWKKKLPLSNGRVDSGFNGKTLIKFKKGHIPPGNPGLQIPETKTERDIKVITGTVLLVSSVFVNFILISTLCFCSSFIYRNKVANVREENN VESNLRSFTYKELTEATEGFKDELGRGAFGGVYKGAIKTGFTNFIAVKKLDGVVEHGEKEFKTEVNVIGQTHHKNLVRLLGFCDEGQHRLLVYEFLSNGT LADFLFGSLRPSWKQRTQIAFGIARGLLYLHEECSTQIIHCDIKPQNILIDDYYNARISDFGLAKLLAINQSQTKTAIRGTKGYVAPEWFRNTPVTVKVD VYSFGVLLLEIICCRRSVDLEISGTGAILIDWAYDCYRHGTLDALIEDDMEAMNDVSTLEGAMKVAIWCIQEVPSLRPTMRKVTQMLEGVVEVPAPPNPF PFSEISCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211932 [exp]	0	1
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Potri.012G006300 [exp]	1.00	0.9358
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.016G036600 [exp]	2.00	0.9277
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Potri.009G033900 [exp]	2.82	0.9211
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.010G245332 [exp]	5.47	0.9015
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221900 [exp]	6.63	0.9041
AT2G19130			S-locus lectin protein kinase ...		Potri.013G149500 [exp]	9.79	0.9099
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Potri.011G131300 [exp]	12.24	0.8886
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.006G009800 [exp]	13.22	0.9099
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Potri.006G067800 [exp]	14.89	0.9238
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088648 [exp]	18.49	0.9052

Compare expression of checked genes

Potri.003G211932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.