Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19630 293 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T056064 [exp] 401 / 4e-144 AT5G19630 293 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G013700 [exp] 372 / 1e-132 AT5G19630 324 / 9e-114 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G191700 [exp] 54 / 1e-08 AT5G19630 77 / 2e-17 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031220 [exp] 320 / 5e-112 AT5G19630 331 / 3e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10031797 [exp] 315 / 5e-110 AT5G19630 325 / 4e-114 alpha/beta-Hydrolases superfamily protein (.1) Lus10021039 [exp] 236 / 2e-78 AT5G19630 267 / 5e-91 alpha/beta-Hydrolases superfamily protein (.1) Lus10004187 [exp] 191 / 2e-61 AT5G19630 230 / 8e-77 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF02129 [poplar] [flax] Peptidase_S15 X-Pro dipeptidyl-peptidase (S15 family)
Representative CDS sequence Show only first row Show all	>Potri.003G212400.1 pacid=42786205 polypeptide=Potri.003G212400.1.p locus=Potri.003G212400 ID=Potri.003G212400.1.v4.1 annot-version=v4.1 ATGTCAAACTATACAGTTGAGTCCACCAAAGTAGAGACAAGTGATGGAGCCAAGCTTCATACAAGGCTGTTCAAGCCAATGGAAGAAGGGAAGATAACAG ACAACTTGGTGGTTGTTCTTGTACATCCATTTTCGATCTTGGGTGGTTGTCAAGCTTTTTTAAAAGGAATTGCTGCTGGGTTGGCTGGAAAAGGTTATAA AACCGTGACCTTTGATATGAGAGGTGCCGGTAAGTCTACTGGGAGGCCTTCTCTTACTGGTTTTGCTGAAATCAAGGATGTCATTGCTGTTTGCAAATGG GTTTGTGAGAATCTGTCTTCTGATAGGATTTTGTTGGTGGGTTCTTCTGCGGGCGCACCGATTGCAGGTTCTGCCGTAGATGAGATTAAAGAAGTCATCG GCTATGTAAGTATAGGGTACCCTTTTGGCATGTTCGCCTCTATCCTTTTTGGAAGACACCACAAGGGAATCCTGAAGTCTCCAAAGCCAAAACTTTTCGT TATGGGAACTCGGGATGGGTTTACCAGTGTTAAACAGCTGCAGAACAAGCTGAGTTCTGCTGCAGGACGTGTTGAAACACATCTAATTGAAGGAGCAAGC CACTTCCAAATGGAAGGTGCTGAATTTGATAACCAGATGGTGAACCTAATCCTTACATTTACCTCATCTTTATAG
AA sequence Show only first row Show all	>Potri.003G212400.1 pacid=42786205 polypeptide=Potri.003G212400.1.p locus=Potri.003G212400 ID=Potri.003G212400.1.v4.1 annot-version=v4.1 MSNYTVESTKVETSDGAKLHTRLFKPMEEGKITDNLVVVLVHPFSILGGCQAFLKGIAAGLAGKGYKTVTFDMRGAGKSTGRPSLTGFAEIKDVIAVCKW VCENLSSDRILLVGSSAGAPIAGSAVDEIKEVIGYVSIGYPFGMFASILFGRHHKGILKSPKPKLFVMGTRDGFTSVKQLQNKLSSAAGRVETHLIEGAS HFQMEGAEFDNQMVNLILTFTSSL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19630			alpha/beta-Hydrolases superfam...		Potri.003G212400 [exp]	0	1
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Potri.017G140000 [exp]	1.73	0.8430	EXP2.10
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.011G061300 [exp]	4.47	0.8527	Pt-RAB11.12
AT5G26910			unknown protein		Potri.005G019700 [exp]	4.89	0.8264
AT5G67130			PLC-like phosphodiesterases su...		Potri.007G045700 [exp]	7.21	0.8198
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Potri.017G111700 [exp]	8.36	0.8294
AT3G56640		SEC15A	exocyst complex component sec1...		Potri.016G032100 [exp]	10.39	0.8220
AT1G53760			unknown protein		Potri.001G161800 [exp]	11.48	0.7810
AT2G34060			Peroxidase superfamily protein...		Potri.011G062300 [exp]	12.96	0.8305
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.009G068000 [exp]	14.69	0.7936
AT3G56750			unknown protein		Potri.006G040400 [exp]	14.83	0.8447

Compare expression of checked genes

Potri.003G212400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.