Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51130 394 / 1e-135 Nse4, component of Smc5/6 DNA repair complex (.1) AT3G20760 332 / 1e-111 Nse4, component of Smc5/6 DNA repair complex (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T028032 [exp] 757 / 0 AT1G51130 395 / 3e-136 Nse4, component of Smc5/6 DNA repair complex (.1) Potri.016G046802 [exp] 375 / 2e-128 AT1G51130 361 / 7e-123 Nse4, component of Smc5/6 DNA repair complex (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039205 [exp] 405 / 6e-140 AT1G51130 369 / 1e-125 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10013735 [exp] 404 / 3e-139 AT1G51130 368 / 2e-125 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10042459 [exp] 347 / 2e-117 AT1G51130 342 / 3e-115 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10004185 [exp] 122 / 1e-32 AT3G20760 94 / 1e-22 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10021041 [exp] 108 / 8e-28 AT1G51130 108 / 6e-28 Nse4, component of Smc5/6 DNA repair complex (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08743 [poplar] [flax] Nse4_C Nse4 C-terminal
Representative CDS sequence Show only first row Show all	>Potri.003G212600.1 pacid=42785772 polypeptide=Potri.003G212600.1.p locus=Potri.003G212600 ID=Potri.003G212600.1.v4.1 annot-version=v4.1 ATGAGTAGAACTGTGAAGAGAGAGGCAGGGAGTACTAGCAATGGAAACCCAGGTGACTTGAACCAAGAACCCAGGGAAATGAAGCGCGAACGAGTGACTC GGAGCCGAGGCAAGTCAGGAGTGGAAGAACCGAATCAGCAAATGGACCGGCGAGTCCTCCGGTCCATGTATCGTACCTTACAGAATAGAATCAAGGATAA GAGAGATGATTTGACGAGACACGATTTGGATAGGTTTAATACTATGATTAAGGAAGTTGAAGACTTGCATAAATTTGTGCAGAAGCCAAGAGAGCAAGTT GCAGATGCAGAGGCGTTATTAGGGTTAGCTAACACATTGGTGTCTTCTGTTAAGTCACAGTCAAATGAGGGTATTACACCTGCAGATTTTGTGTCCCATT TGATTAAAGAGTTTGGACAGCAAACTAGGAGTCTAGACAATGATGAGGATGCTCCGGTTTCAATCAAGTGGAAAGATCTTGGCCTTCTTGTTTCTCCTAT TTTTCGGAGGTGCACGGGGGTTAGTACGATGTTGGGACCAATGAATACGGAGTTGAAACAAAGAAAGGCAGCGGTTCATAGAAAGCGTACAAGGCCAGCT GAAAAGGCTCGGCCTGAAGAGGTTGATGATGCTGGAGGAGAAAAGAAGACAGATACTGATAAGAATATGAAAATAATCTTTGATATCTTAAAGGAGAAGA AAAGTGTTAGACTTGAAAATTTGATCTTGAACAGAAGGTCTTTTGCAGAGACTGTGGAGAATTTATTTGCACTCTCATTCTTAGTGAAAGATGGCAGGGT TAAAATTGTTGTGGATGAAAGTGGATGCCATTTTGTTTCACCTAGGAATGCTCCAGCTCCCAGTTCTGTTATGTCAGGGGAGGTTGCTTACAGACATTTC GTGTTCAGATTTGACTTTAGAGATTGGAAGCTGATGAAGGGTGTGGTGCCGGATGGCGAGGAGCTTATGCCACATAGGGAAAGTTCTGGTGCTTCTCAGG TGGAGCCAGATGCTAACAACACTGAAGGAACACGATCTAGGACACCCATCAGGAAATTCTCTAGGAACCGTGGCCTGGTTGTCCAAGAAGATTCAGTTGT CGTGGAAGACTCTCCCGATATTGATGATGATGTAGATGCAAGAGCCACTGGCCTCATGAGGTGTAGGCGTAAGCTTGCTTGA
AA sequence Show only first row Show all	>Potri.003G212600.1 pacid=42785772 polypeptide=Potri.003G212600.1.p locus=Potri.003G212600 ID=Potri.003G212600.1.v4.1 annot-version=v4.1 MSRTVKREAGSTSNGNPGDLNQEPREMKRERVTRSRGKSGVEEPNQQMDRRVLRSMYRTLQNRIKDKRDDLTRHDLDRFNTMIKEVEDLHKFVQKPREQV ADAEALLGLANTLVSSVKSQSNEGITPADFVSHLIKEFGQQTRSLDNDEDAPVSIKWKDLGLLVSPIFRRCTGVSTMLGPMNTELKQRKAAVHRKRTRPA EKARPEEVDDAGGEKKTDTDKNMKIIFDILKEKKSVRLENLILNRRSFAETVENLFALSFLVKDGRVKIVVDESGCHFVSPRNAPAPSSVMSGEVAYRHF VFRFDFRDWKLMKGVVPDGEELMPHRESSGASQVEPDANNTEGTRSRTPIRKFSRNRGLVVQEDSVVVEDSPDIDDDVDARATGLMRCRRKLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51130			Nse4, component of Smc5/6 DNA ...		Potri.003G212600 [exp]	0	1
AT4G39380			unknown protein		Potri.007G077700 [exp]	1.00	0.8051
AT1G19980			cytomatrix protein-related (.1...		Potri.005G239500 [exp]	2.00	0.7348
AT1G80710		DRS1	DROUGHT SENSITIVE 1 (.1)		Potri.018G112500 [exp]	10.24	0.7321
AT1G09280			unknown protein		Potri.005G011300 [exp]	17.66	0.6539
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Potri.005G019800 [exp]	30.82	0.6543
AT1G60080			3'-5'-exoribonuclease family p...		Potri.016G055600 [exp]	31.73	0.6667
AT4G13690			unknown protein		Potri.003G177900 [exp]	39.94	0.7137
AT4G35850			Pentatricopeptide repeat (PPR)...		Potri.001G341400 [exp]	45.19	0.6842
AT5G59970			Histone superfamily protein (....		Potri.007G012500 [exp]	48.37	0.6832
AT5G35530			Ribosomal protein S3 family pr...		Potri.012G076800 [exp]	50.55	0.6682

Compare expression of checked genes

Potri.003G212600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.