Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19640 749 / 0 Major facilitator superfamily protein (.1) AT1G32450 645 / 0 NRT1.5 nitrate transporter 1.5 (.1) AT4G21680 606 / 0 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT3G54140 486 / 3e-166 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 451 / 2e-152 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 446 / 2e-150 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G01180 436 / 1e-146 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 378 / 1e-124 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G26690 350 / 4e-113 Major facilitator superfamily protein (.1) AT5G46050 343 / 1e-110 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G013400 [exp] 1048 / 0 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1) Potri.001G145200 [exp] 659 / 0 AT1G32450 949 / 0.0 nitrate transporter 1.5 (.1) Potri.003G088800 [exp] 651 / 0 AT1G32450 979 / 0.0 nitrate transporter 1.5 (.1) Potri.014G179400 [exp] 647 / 0 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.010G100200 [exp] 486 / 5e-166 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 472 / 7e-161 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 462 / 4e-157 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 457 / 7e-155 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 456 / 1e-154 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013736 [exp] 787 / 0 AT5G19640 728 / 0.0 Major facilitator superfamily protein (.1) Lus10039204 [exp] 783 / 0 AT5G19640 727 / 0.0 Major facilitator superfamily protein (.1) Lus10030945 [exp] 637 / 0 AT1G32450 920 / 0.0 nitrate transporter 1.5 (.1) Lus10040102 [exp] 633 / 0 AT1G32450 910 / 0.0 nitrate transporter 1.5 (.1) Lus10000673 [exp] 627 / 0 AT1G32450 931 / 0.0 nitrate transporter 1.5 (.1) Lus10011058 [exp] 618 / 0 AT1G32450 926 / 0.0 nitrate transporter 1.5 (.1) Lus10011055 [exp] 474 / 2e-161 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 471 / 6e-160 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 467 / 2e-158 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 459 / 1e-155 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.003G212900.3 pacid=42786085 polypeptide=Potri.003G212900.3.p locus=Potri.003G212900 ID=Potri.003G212900.3.v4.1 annot-version=v4.1 ATGGATTCAGACCCTTCCACCGATTATGTGACAGGAGAAAGTGTCATCTCTAGAGAAAATGTAGCTGTGAACAGAATCAGAACTGAGGAAGAACACGATA TTGCTAGCAATAAGCGCTCCATTACTTGGAAGAGCTCTGGAGGGTGGAAAGCTGCAAGCATCTTGCTAGCAAATCAATGCCTGGCTACACTAGCTTTCTT TGGAGTTGGTGTGAATTTGGTTCTGTTCTTAACAAGAGTTCTTGGTCAAAGTAATGCTGATGCTGCCAATAGTGTCAGCAAGTGGACTGGCACAGTTTAT CTGTGCTCACTCATAGGAGCTTTCCTCAGTGATTCATACTGGGGCAGATACTTGACCTGTGCAGTCTTTCAGTTAATATTCGTTTCGGGGTTGGCGCTCG TATCGGTATCATCTTGTTATTTCTTGATCAAACCAGATGGATGTGGTGATGGAGAATTAGCCTGTGAGCCAACATCGTCGGTGGGAGTGGCTATTTTTTA CTTGGCTATATATTTAGTTGCCTTTGGATATGGTGGGCATCAACCTTCTTTAGCCACATTTGGAGCAGACCAATTTGACGAGTCGAAACCGAAAGAAAAA AATTACAAGGCAGCTTACTTTTGCTATTTCTATTTTGCACTCAACTTTGGATCTCTATTCTCAAACACTATTTTGGTGTATTTTGAGGATCATGGAAAAT GGACACTAGGTTTCCTGGTGTCATTAGGCTCTGCAGTTTTAGCCTTGGTATCGTTCTTGTTTGGGACACCTGGTTACCAGTATGTGAAACCTTGCGGCAA CCCTTTGCCGCGAGTTGCTCAGGTGTTTGTGGCTGCAGTTAAGAAATGGGATGTTATCCCGGCGAAAGCTGATGAACTTTATGAAGTGGAAGGACCAGAA TCTGCTATCAAAGGGAGCAGAAAGATTCTTCATAGTGATGATTTTGAGTTTTTGGACAAGGCAGCAACAGTAACAGAGGATGATCTAAGTCACCAAAAGA ATCCATGGAGGCTTTGCACAATAAGTCAAGTAGAGGAAGCTAAATGTGTTCTTAAAATGTTACCTATTTGGCTATGCACTATAATTTACTCTGTTGTTTT CACACAAATGGCCTCCCTCTTTGTTGAGCAAGGAGATGTCATGAACTCCTATGCTGGAAAGTTTCACCTACCAGCAGCTAGCATGTCTGCCTTTGATATC TGCAGTGTCCTTGTTTGCACTGGGATTTATCGCCAAATCCTCGTGCCATTAGCTGGAAGGTTAAGTGGTAATACCAAGGGGTTAACGGAGCTTCAGAGAA TGGGAATCGGACTCATCATTGGGATGCTAGCAATGTTCGCAGCAGGGGCTACTGAGATTGAAAGGCTCAAGCATGTTACTGAAGGGAAAAAAGTTAGCTC ACTAAGCATATTTTGGCAAATTCCACAATACGTTCTTGTCGGTGCATCTGAGGTTTTCATGTATGTAGGCCAGTTGGAGTTCTTTAACGGGCAAGCACCA GACGGGATTAAGAGTTTTGGAAGCTCACTTTGCATGGCTTCAATCTCCCTTGGCAACTATGTCAGCAGCATGCTAGTCAGCATGGTGATGAAGATTACAG CTAAAGGTGACAAGCCTGGATGGATCCCAGATGACTTGAACACAGGCCACATGGACAGGTTCTACTTCCTGATTGCAGTCTTAACAGCCTTTGATTTTGT GATTTACTTGTTCTGTGCCAACTGGTACACGCCTATCAACATTGATGACAGCCACGGAGGAATTGGGATGGAAAAGCAAGAAGATGATGCGCTTGCAAGA GTTTAA
AA sequence Show only first row Show all	>Potri.003G212900.3 pacid=42786085 polypeptide=Potri.003G212900.3.p locus=Potri.003G212900 ID=Potri.003G212900.3.v4.1 annot-version=v4.1 MDSDPSTDYVTGESVISRENVAVNRIRTEEEHDIASNKRSITWKSSGGWKAASILLANQCLATLAFFGVGVNLVLFLTRVLGQSNADAANSVSKWTGTVY LCSLIGAFLSDSYWGRYLTCAVFQLIFVSGLALVSVSSCYFLIKPDGCGDGELACEPTSSVGVAIFYLAIYLVAFGYGGHQPSLATFGADQFDESKPKEK NYKAAYFCYFYFALNFGSLFSNTILVYFEDHGKWTLGFLVSLGSAVLALVSFLFGTPGYQYVKPCGNPLPRVAQVFVAAVKKWDVIPAKADELYEVEGPE SAIKGSRKILHSDDFEFLDKAATVTEDDLSHQKNPWRLCTISQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSYAGKFHLPAASMSAFDI CSVLVCTGIYRQILVPLAGRLSGNTKGLTELQRMGIGLIIGMLAMFAAGATEIERLKHVTEGKKVSSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAP DGIKSFGSSLCMASISLGNYVSSMLVSMVMKITAKGDKPGWIPDDLNTGHMDRFYFLIAVLTAFDFVIYLFCANWYTPINIDDSHGGIGMEKQEDDALAR V

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19640			Major facilitator superfamily ...		Potri.003G212900 [exp]	0	1
AT5G53486			unknown protein		Potri.012G017400 [exp]	1.73	0.9124
ATCG01120		ATCG01120.1, RP...	chloroplast ribosomal protein ...		Potri.012G027700 [exp]	13.34	0.9267
AT1G80580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G313500 [exp]	17.20	0.7813	ERF52
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Potri.009G121600 [exp]	21.49	0.8416
					Potri.015G074450 [exp]	24.89	0.7743
ATCG01110		ATCG01110.1, ND...	NAD(P)H dehydrogenase subunit ...		Potri.013G074650 [exp]	31.08	0.8922
					Potri.018G110450 [exp]	31.73	0.8675
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.019G061800 [exp]	41.95	0.7597
ATCG01090		ATCG01090.1, ND...	NADPH dehydrogenases (.1)		Potri.013G074950 [exp]	45.36	0.8666
					Potri.003G143300 [exp]	48.17	0.7358

Compare expression of checked genes

Potri.003G212900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.