Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20750 64 / 2e-12 GATA GATA29 GATA transcription factor 29 (.1) AT4G34680 56 / 2e-09 GATA GATA3 GATA transcription factor 3 (.1.2) AT2G18380 56 / 3e-09 GATA GATA20, HANL1 hanaba taranu like 1, GATA transcription factor 20 (.1) AT3G60530 56 / 3e-09 GATA GATA4 GATA transcription factor 4 (.1) AT5G25830 56 / 3e-09 GATA GATA12 GATA transcription factor 12 (.1) AT4G36620 54 / 8e-09 GATA GATA19, HANL2 hanaba taranu like 2, GATA transcription factor 19 (.1) AT4G32890 55 / 9e-09 GATA GATA9 GATA transcription factor 9 (.1) AT2G45050 54 / 1e-08 GATA GATA2 GATA transcription factor 2 (.1) AT5G49300 52 / 1e-08 GATA GATA16 GATA transcription factor 16 (.1) AT3G50870 54 / 2e-08 GATA GATA18, HAN, MNP MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G237700 [exp] 59 / 6e-10 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1) Potri.005G020500 [exp] 55 / 3e-09 AT3G06740 67 / 1e-14 GATA transcription factor 15 (.1) Potri.002G142800 [exp] 56 / 4e-09 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.014G058600 [exp] 56 / 4e-09 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.018G044900 [exp] 56 / 5e-09 AT5G25830 247 / 2e-79 GATA transcription factor 12 (.1) Potri.004G211800 [exp] 55 / 1e-08 AT1G08010 150 / 4e-43 GATA transcription factor 11 (.1.2) Potri.005G066100 [exp] 54 / 1e-08 AT4G36240 114 / 1e-30 GATA transcription factor 7 (.1) Potri.005G122700 [exp] 53 / 3e-08 AT3G50870 198 / 1e-62 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Potri.007G024500 [exp] 53 / 3e-08 AT3G50870 202 / 5e-64 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038150 [exp] 59 / 5e-11 AT3G20750 62 / 2e-12 GATA transcription factor 29 (.1) Lus10038273 [exp] 58 / 9e-10 AT4G32890 219 / 1e-69 GATA transcription factor 9 (.1) Lus10028178 [exp] 56 / 6e-09 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10041313 [exp] 55 / 9e-09 AT1G08010 163 / 2e-48 GATA transcription factor 11 (.1.2) Lus10025829 [exp] 55 / 1e-08 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1) Lus10037572 [exp] 55 / 1e-08 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10011430 [exp] 55 / 1e-08 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10037398 [exp] 55 / 1e-08 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10042879 [exp] 54 / 2e-08 AT2G45050 147 / 1e-43 GATA transcription factor 2 (.1) Lus10028301 [exp] 53 / 2e-08 AT3G50870 135 / 4e-39 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Potri.003G213300.1 pacid=42784777 polypeptide=Potri.003G213300.1.p locus=Potri.003G213300 ID=Potri.003G213300.1.v4.1 annot-version=v4.1 ATGGAATCCCAGTGGTTTGATCAGGCTACTGATAATTGGAAAGGGGGTTGTGATCATCAGAATAACACAGAAAACAATGTGGATTTGACTCTGAAATTGG GATTGCCAGATGATCAACCACAATTTGAGCAATACTTTAGGTCTAATAGGGCCCTCAAGACCCATCAACCAGCCATCCTCAGCTTCAATGCTCCTTACTC ACAGGGCACAAATCATCATGATATGGCTAATGCTGGTTTAAATCACCATGGGAGGCTTAATGGAGACAATCTTCATGGATCTTGGCCACGGGAGATGATG GGGAACCATCCCCATTACATGAATACTCAATATGCTGCTGATTCTGCAGTGGGATTTGCTGCTTACCCCAAGTCCTACAGTTGCATCAACAGCAATCCTG GTAACTTTCAAATACCAACGATGAACGGTCGAACACTCCTCAACACAGTAGCTAGGGATGGTGATCATGGTGAGGTTGGAAGTTCCTCTGGTTCACGTAG GACCTTTATTGACCATAATAAGAGGTGCAGTAACCGGAGTTGCAACACCGATGACACACCAATGTGGCGCAAAGGCCCCCTTGGTCCCAAGACACTCTGT AATGCATGTGGTATCAAGTACAGAAAGGAAGAGGAGAAAAGAAGGGCTAGAGAAGCAGCCCGACGGACTAACGGCATTTAG
AA sequence Show only first row Show all	>Potri.003G213300.1 pacid=42784777 polypeptide=Potri.003G213300.1.p locus=Potri.003G213300 ID=Potri.003G213300.1.v4.1 annot-version=v4.1 MESQWFDQATDNWKGGCDHQNNTENNVDLTLKLGLPDDQPQFEQYFRSNRALKTHQPAILSFNAPYSQGTNHHDMANAGLNHHGRLNGDNLHGSWPREMM GNHPHYMNTQYAADSAVGFAAYPKSYSCINSNPGNFQIPTMNGRTLLNTVARDGDHGEVGSSSGSRRTFIDHNKRCSNRSCNTDDTPMWRKGPLGPKTLC NACGIKYRKEEEKRRAREAARRTNGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20750	GATA	GATA29	GATA transcription factor 29 (...		Potri.003G213300 [exp]	0	1
AT4G17020			transcription factor-related (...		Potri.004G041600 [exp]	7.21	0.9473
					Potri.004G095550 [exp]	7.61	0.9535
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Potri.013G009700 [exp]	9.21	0.9468
AT2G29500			HSP20-like chaperones superfam...		Potri.004G187202 [exp]	10.67	0.9474
AT4G18490			unknown protein		Potri.011G063500 [exp]	13.49	0.9442
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054000 [exp]	14.07	0.9461
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Potri.010G147050 [exp]	18.16	0.9414
AT2G29500			HSP20-like chaperones superfam...		Potri.009G148000 [exp]	19.44	0.9418
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Potri.013G018000 [exp]	21.74	0.9395	HSP70.11
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Potri.001G182100 [exp]	22.97	0.9362	Pt-A37.1

Compare expression of checked genes

Potri.003G213300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.