Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18220 413 / 2e-139 Noc2p family (.1) AT3G55510 174 / 2e-49 RBL REBELOTE, Noc2p family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G012800 [exp] 527 / 0 AT2G18220 766 / 0.0 Noc2p family (.1) Potri.008G043400 [exp] 200 / 2e-58 AT3G55510 591 / 0.0 REBELOTE, Noc2p family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025551 [exp] 446 / 5e-151 AT2G18220 831 / 0.0 Noc2p family (.1) Lus10027010 [exp] 380 / 4e-127 AT2G18220 760 / 0.0 Noc2p family (.1) Lus10036510 [exp] 186 / 4e-52 AT5G57250 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026968 [exp] 157 / 3e-44 AT3G55510 336 / 1e-110 REBELOTE, Noc2p family (.1) Lus10041417 [exp] 161 / 9e-44 AT3G55510 487 / 2e-163 REBELOTE, Noc2p family (.1) Lus10020167 [exp] 159 / 2e-43 AT3G55510 459 / 3e-154 REBELOTE, Noc2p family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03715 [poplar] [flax] Noc2 Noc2p family
Representative CDS sequence Show only first row Show all	>Potri.003G213601.2 pacid=42785698 polypeptide=Potri.003G213601.2.p locus=Potri.003G213601 ID=Potri.003G213601.2.v4.1 annot-version=v4.1 ATGGTGATGATGGAGGTGGTGATTCTTCAGCGAAGTATAGTATTATGTCTAGGTGTATTCAATAAAGTGATGTTATTTGTATTGAGTGAAATGGATGGAA TCCTTCGTAATGTCTTGGGCCTTCCTGCTTTTGGTGGGAAGAAAGAAACTGTAAATGATCTTCTGCACACAAAAAAATGGATGAACTATAACCACCTGGC AAAGTCTTATCTTGGAAATGCCCTATATGTTTTGAACCAAATGACTGACACGCAGATGATATCATTTACTTTACGCCATCTCAAATTTTCATCTGTGCTT TTAGTTGCCTTTCCAGCTCTCTTACGGAAATATATTAAGGTTGCCCTTCACTTTTGGAGTACTGGAGAAGGTGTCCTCCCTTTGGTGGCCTTTTTCTTTT TAAGGGATGTATGCATTTGGATTGGATCGGATTGTTTAGACGATTGCCTCAAAGGGATATACAAAGCCTATGTTTTGAACTGTCACTTCATAAATGCAGC AAAGTTACAGCATATTCAATTTCGTGCAAATTGTGTCATAGAGCTTCTTGGGGTGGACCTGCCAACTGCATATCAACATGCCTTTGTTTTCATCCGCCAG TTGGCAATGATTTTACGAGATGCAATTACTATGAAAACTAAGCTGAATGGCAGTGCTGACCCAACTAGTCTGCGGTTGAGGCTTGTTGCTGCTGCTGCTG CTGTTGTTGTATTGATGTGTGAATTCAATCTTCGTGTATTCTATTTATTGGATTCATTTTGCAAGGTTTATGAATGGAAGTTCATGAATTTCCTTGAACT TTGGACTGGAGCTATCTGCACCTATAGCTCAGAAGCTGATCTCAACCCTCTTGCTTATCCACTGACCCAAATAATTTCAGGGGTTGCCCGCCTAGTTCCT ACTGCTCGATGCTTTCCCCTTAGATTGAGGTGTGTTAGAATGCTTAATCGGATTGCTGCTTCAACTGGTACTTTTATACCTGTATCTATGCTGCTTCTGG ACATGTTGGAGATGAAAGAATTAAATAGCCCCCCCCCCCACTGGAGGTGTTGGTAA
AA sequence Show only first row Show all	>Potri.003G213601.2 pacid=42785698 polypeptide=Potri.003G213601.2.p locus=Potri.003G213601 ID=Potri.003G213601.2.v4.1 annot-version=v4.1 MVMMEVVILQRSIVLCLGVFNKVMLFVLSEMDGILRNVLGLPAFGGKKETVNDLLHTKKWMNYNHLAKSYLGNALYVLNQMTDTQMISFTLRHLKFSSVL LVAFPALLRKYIKVALHFWSTGEGVLPLVAFFFLRDVCIWIGSDCLDDCLKGIYKAYVLNCHFINAAKLQHIQFRANCVIELLGVDLPTAYQHAFVFIRQ LAMILRDAITMKTKLNGSADPTSLRLRLVAAAAAVVVLMCEFNLRVFYLLDSFCKVYEWKFMNFLELWTGAICTYSSEADLNPLAYPLTQIISGVARLVP TARCFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLEMKELNSPPPHWRCW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18220			Noc2p family (.1)		Potri.003G213601 [exp]	0	1
AT2G18220			Noc2p family (.1)		Potri.003G213450 [exp]	1.41	0.9482
AT1G17070			GC-rich sequence DNA-binding f...		Potri.019G043200 [exp]	2.44	0.9343
					Potri.010G228883 [exp]	2.82	0.9392
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.018G146001 [exp]	3.16	0.9245
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129500 [exp]	6.00	0.9185
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Potri.010G228766 [exp]	7.34	0.9102
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.004G090666 [exp]	8.06	0.8966
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057900 [exp]	8.77	0.9084
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.004G090732 [exp]	9.79	0.9020
					Potri.002G115501 [exp]	10.67	0.8829

Compare expression of checked genes

Potri.003G213601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.