Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42340 84 / 3e-16 PUB15 Plant U-Box 15 (.1) AT1G23030 76 / 6e-14 PUB11 ARM repeat superfamily protein (.1) AT1G71020 75 / 2e-13 ARM repeat superfamily protein (.1.2) AT1G29340 74 / 3e-13 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G07360 74 / 4e-13 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT1G76390 73 / 8e-13 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G60190 73 / 1e-12 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT5G01830 72 / 1e-12 ARM repeat superfamily protein (.1) AT2G28830 72 / 3e-12 AtPUB12 PLANT U-BOX 12 (.1) AT1G68940 72 / 3e-12 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G012300 [exp] 1193 / 0 AT5G42340 72 / 7e-13 Plant U-Box 15 (.1) Potri.015G117300 [exp] 203 / 2e-53 AT3G06880 53 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G118600 [exp] 201 / 8e-53 AT3G06880 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G240100 [exp] 115 / 8e-26 AT3G06880 237 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G021600 [exp] 110 / 4e-24 AT3G06880 231 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G083600 [exp] 106 / 6e-23 AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G165900 [exp] 83 / 6e-16 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.002G248600 [exp] 80 / 3e-15 AT3G07360 573 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.001G238500 [exp] 79 / 1e-14 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039197 [exp] 1009 / 0 AT1G23030 79 / 2e-14 ARM repeat superfamily protein (.1) Lus10013745 [exp] 978 / 0 AT1G23030 78 / 2e-14 ARM repeat superfamily protein (.1) Lus10038340 [exp] 209 / 2e-55 AT3G06880 66 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10036201 [exp] 202 / 3e-53 AT3G06880 61 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013551 [exp] 139 / 8e-33 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017257 [exp] 120 / 3e-27 AT3G06880 186 / 3e-47 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10034937 [exp] 102 / 2e-21 AT3G06880 248 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023667 [exp] 97 / 2e-20 AT2G28830 84 / 9e-17 PLANT U-BOX 12 (.1) Lus10023666 [exp] 87 / 6e-17 AT3G06880 246 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038699 [exp] 78 / 2e-14 AT3G54850 599 / 0.0 plant U-box 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.003G214100.3 pacid=42786210 polypeptide=Potri.003G214100.3.p locus=Potri.003G214100 ID=Potri.003G214100.3.v4.1 annot-version=v4.1 ATGGCAACATCTTTGGAGGAGCTTCTTGCAAAGGAAGGGTTTAGAGGAGGGAGATCAGGGACAAGGGCAAGACCTTCATTCAAAGCAGAAGCTGCAAGTA TGCCTCGTTACCCTTTTGGTGACCAAGGCAAAAGAGACTCTCCATCTGGTCCATCTATGCGGAGAATCAAGACCGAAAGGACAAGGTCTGATGTCACTCG GTATACCTTGAGAGGTGAATCACCAGGAAGTAATAGTAGTTTGAGTAGGAGACCTAGGGATGACTTGGTTAAACGAGAAAAATTAGATTCAAGATTGAAG GCAGAACATCGCGGCAGAGGTTCGAAAGATGTGAAGGAAGATAAGACCCTGAAAGTTGAAACATTGGAAGATGTCAAGGGTAGTGAGATTGTTGAGGTTG GTGTAGAAGAAAATGAGACGTTTAAGGATATACACTCTGATATAGCATATTATTCAGAGAGAACTGAACGATCATCGAAAGGTAATGGGAGCAAGGAGAG GCAGAGAGAGGGGAAAGGAAAGGATAAGAAAGTTCCTGAGAGGCATCACAGCATTTCTAATGAAAATTTGGAAAAACACTCAGAATTTAGCAATGACAAC AGGAGAAGTGTGGACCAGTCTGAGGCGGTTTATGAAAGTTCGGTTAGAGGCTCAAAGATTGGCAATGGCTTTGAAGATGATCAGAGACCAAAGAATCAGA AAAGGGCACCAGCAGTTCCTGAAATTGCTCTTGATGAAGTTGCTGTTAAAGCTGTAATCTCCATCTTAAATGGCTATATCAAGCGTTTTTTCAAAGATGC AGAATTCCGAACCACGCTTCGCCAGAATTGTTTCTCTTCACTTGCTTCTATCGAAATAGAAGAAGGCAACAGCATTGAGATCAAGGCCAAGGCCAATCTT GAACAAGCTATTGAAACAGTGGAAAAGGCTGTTGAGGCAGCTGCAGGGACAAAGGATTTGAAAACAGCTGCTTTGCTACTTAGTGTGATCACAAGTTTGA ACTCAAATGATCTGAAAGATGACTACACATCAGGAACTCCAAATTCTAGGTTGTCAGCTTGTGCTCACATCTACCTTAGTGTGATATACAAGCTACGAAA GAAGGATAAGGTTTCAGCTAAGCATCTTTTGCAAGTGTTCTGTGATTCTCCTTTTCTGGCAAGAACACTTCTGTTGTCTGAACTGTGGGACTATCTATTC TTCCCTCATCTTTCGCATTTGAAGACTTGGTACAAAAAAGAGGCAGATCCTTTATTCAACACGGCAAGCAAGATTACGAAACTTAAGTTTCTTGACAAAG TTTATAATGAAGTTCTGGATTCTTGTACTTACCAATTTGCAGTTTACTACAAGGATTGGCTCGCAGAGGGGGTGGAAGCTCCTTCTATTCCTTCAGTCAA CATCCCTTTCATTTCACAGCAGGGAGGCACGCAAGATCATTCTTCAGGACCAGCTAGTCCGGCTGCTCCTTTCTTACCCCAGCCAATGGTGAGTAAGAAA TTATACGATGCTGTATTTGGCCATTCAAGTAAACCTAGAGTTTATGATGCTGAAGAAAATTGGAAGGCAGATAACTTCAATAATGGTGCAAACAGCTCTG GTTCATCTCCTATTCAAGTCAAACAAACACTGACAAGCTCTTCCGAAATGGTCAAATATCCTGGTCAAGATATAGAAAACCATTCCCCTGAGAATTTACA TGATAACACGTCCATTCTTGATAATGGGCTCTTATCAGCGTCTGACGAAGAATGGAAGCTGGTTAATGTGAGTGTTTCACCAGACACAGATCTGAAAGAT GACAATCGCAAATCCAGTGCAGGGCAAGTATCTGCTGGAGACACTCATATGCTAAATTCATCTTCACATACAAAAGAAAATGAGCTAACCCTCAAGACCC TAGCAAAATCTGTTTTCAAAATTCAACGAACTGAGGATTCTGGTGATCTCACTGTTTCAGACCTTTTACATCCCAAAAAGGCAATCAACGCAAGCGCTTC TATCGAAGGGTTAAATGGAAGTCATGAATCTTTTGATGAAGGATCCATTTTTGAAAGCATTCCACAGGACTTTGTTTGCCCTCTCACTAGACAGTTGTTT GAGGATCCAGTGACACTGGAGACTGGTCAAACCTTTGAGAGAGAAGCCATCAGGAAATGGTTTAATCAGGGAAACAGAACATGTCCCTTAACAGGAAAAA CTTTAGAATGTCCAACTATACCACTCACCAACTTTATTTTGAAGCGTATGATCGATAGTTGGAAGTTGGAGCGATGTAATCACCTATTGTCTTTTGCATC TCAAATATTCAAGAACTCTGAGGCATATGATTCAAGACAAAGGAATGAAGATGCTTTATTCATACTTGAGAAGCTTCTTGCTTCTTCCAGTAGGGAGGAA AGATTAACAAATGCCAAACACCTCATTTCTCTTGGAGTCCTGGAATTTCTTATTAAAAGGTTTGAATTTGGTAGTTTGGAAGAGAAAACTCTGGTTGCAG CTCTCTTATCATGTTGTATTGAGGCAGAGTCAAGCTGCAGAAACCATATAGCTATAAAGATTGATAAACAATGTCTCTTCGAGTTACTCCACGGCAACCA ATCTAAGTCTGCAAGAAATGTTGTAGGTCTGTTGATTGAGTTAGTTTGTCTGAGCAGGAGGAAAGGGGTTACACAATTTATAAGTGGCTTACCTAGTGAG ACAATAGTGCATGCGATGGACATTCTACTCGTCTATCTTCAGAGTTCTCCAGCTGAGGAACCCTTGGTGGCTGTTCTGATCTTACACTTGGATCTTCTGG TTGAACCTCGGAAGTATAGCATCTACAGAAAGGAAGCCGTTGATGCCATTTCAATGGCCTTGGAAAGTAGCTTAACTGATGAGAAGGTCCGGGAACAGTC TTGCAGAGCACTTAATGTCTTGGGGGGGATTTTTTCTGCTTCTGGGAACTCATCAACAGAAAGTTGGATCCTAAAGCAAGCAGGGTTTGATAAAAATCAT GAAGTAAATTCTCGAGAAGATAATTTACTTCTCGATGATCCTCTTTCGCCGGAAGATGAAGAAGAGTCCAGTGAAGAATGGTTGAGGAACTTGTCAGAAT CATTGCTTGCTAATGGCAAAATGTCAATTTTAGAGACCATATCAAAGTGTTTAAGTTCAGGAATCTTGGATTTAGTGAGGGCATGCCTAACCACAATTGC ATGGTTAAGCTGTGGAATCTCTTTGCTACCGGATTCGGAGCTCCAGCTCTTTGGCTTCCCCACTCTCATCTCTGGGCTCAAGGAAATCTTGGAAGATGAT GAGCAGATTGAGCACCAAGTTCTTGCTTCAATGTCCTTGTTAAATCTCAGTAAAAATCCAGAATGCGGGAGTCTGCTAATGATAATTGCAGAAGAAATTT CGGTTCCACTACAAAGCCTAGCTGAAGTAACATGGACAGCAAAAGAGCTACATGCCATCATTTCTGGAGAAGATCCTTAG
AA sequence Show only first row Show all	>Potri.003G214100.3 pacid=42786210 polypeptide=Potri.003G214100.3.p locus=Potri.003G214100 ID=Potri.003G214100.3.v4.1 annot-version=v4.1 MATSLEELLAKEGFRGGRSGTRARPSFKAEAASMPRYPFGDQGKRDSPSGPSMRRIKTERTRSDVTRYTLRGESPGSNSSLSRRPRDDLVKREKLDSRLK AEHRGRGSKDVKEDKTLKVETLEDVKGSEIVEVGVEENETFKDIHSDIAYYSERTERSSKGNGSKERQREGKGKDKKVPERHHSISNENLEKHSEFSNDN RRSVDQSEAVYESSVRGSKIGNGFEDDQRPKNQKRAPAVPEIALDEVAVKAVISILNGYIKRFFKDAEFRTTLRQNCFSSLASIEIEEGNSIEIKAKANL EQAIETVEKAVEAAAGTKDLKTAALLLSVITSLNSNDLKDDYTSGTPNSRLSACAHIYLSVIYKLRKKDKVSAKHLLQVFCDSPFLARTLLLSELWDYLF FPHLSHLKTWYKKEADPLFNTASKITKLKFLDKVYNEVLDSCTYQFAVYYKDWLAEGVEAPSIPSVNIPFISQQGGTQDHSSGPASPAAPFLPQPMVSKK LYDAVFGHSSKPRVYDAEENWKADNFNNGANSSGSSPIQVKQTLTSSSEMVKYPGQDIENHSPENLHDNTSILDNGLLSASDEEWKLVNVSVSPDTDLKD DNRKSSAGQVSAGDTHMLNSSSHTKENELTLKTLAKSVFKIQRTEDSGDLTVSDLLHPKKAINASASIEGLNGSHESFDEGSIFESIPQDFVCPLTRQLF EDPVTLETGQTFEREAIRKWFNQGNRTCPLTGKTLECPTIPLTNFILKRMIDSWKLERCNHLLSFASQIFKNSEAYDSRQRNEDALFILEKLLASSSREE RLTNAKHLISLGVLEFLIKRFEFGSLEEKTLVAALLSCCIEAESSCRNHIAIKIDKQCLFELLHGNQSKSARNVVGLLIELVCLSRRKGVTQFISGLPSE TIVHAMDILLVYLQSSPAEEPLVAVLILHLDLLVEPRKYSIYRKEAVDAISMALESSLTDEKVREQSCRALNVLGGIFSASGNSSTESWILKQAGFDKNH EVNSREDNLLLDDPLSPEDEEESSEEWLRNLSESLLANGKMSILETISKCLSSGILDLVRACLTTIAWLSCGISLLPDSELQLFGFPTLISGLKEILEDD EQIEHQVLASMSLLNLSKNPECGSLLMIIAEEISVPLQSLAEVTWTAKELHAIISGEDP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.003G214100 [exp]	0	1
AT1G71530			Protein kinase superfamily pro...		Potri.019G073100 [exp]	6.32	0.7864
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.019G062332 [exp]	8.12	0.8295
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.013G046700 [exp]	10.81	0.7636
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017900 [exp]	12.32	0.8496
AT4G31930			Mitochondrial glycoprotein fam...		Potri.006G261601 [exp]	18.97	0.7980
AT5G04550			Protein of unknown function (D...		Potri.006G117000 [exp]	19.18	0.7059
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Potri.009G059200 [exp]	20.19	0.7692	Pt-TWD1.1
AT1G55200			Protein kinase protein with ad...		Potri.002G130300 [exp]	21.63	0.7424
AT1G74160			unknown protein		Potri.012G061900 [exp]	24.59	0.7247
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165001 [exp]	24.91	0.7777

Compare expression of checked genes

Potri.003G214100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.