Plant FIBer expression Database

Potri.003G214300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G19900 293 / 8e-94 PRLI-interacting factor, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G011800
[exp]
367 / 5e-124 AT5G19900 281 / 2e-90 PRLI-interacting factor, putative (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019670
[exp]
275 / 1e-86 AT5G19900 313 / 2e-101 PRLI-interacting factor, putative (.1)
Lus10000691
[exp]
268 / 1e-84 AT5G19900 304 / 4e-98 PRLI-interacting factor, putative (.1)
Lus10000189
[exp]
149 / 2e-41 AT5G19900 179 / 5e-53 PRLI-interacting factor, putative (.1)
PFAM info
Representative CDS sequence
>Potri.003G214300.1 pacid=42784504 polypeptide=Potri.003G214300.1.p locus=Potri.003G214300 ID=Potri.003G214300.1.v4.1 annot-version=v4.1
ATGAACGATCAGCCACCGGCGACGATCATGAACCAGCAGCCACCGCAATTGATGAGTCAGGCACCGCCTATTCCGGTCATGAATCCGGCACAACCTCCTC
CTCCGCCGATTTCTATTCAGTCACAGATGTTGAGTCACAGTCAAGCCATGAATCAACCACAGCCGTTGATGATGATGAACCAGAGACCGTACAAGAAGTT
TCAAAATCAGCAGCAGAATCCGTTGAAGTTCAATAACAATTTTGTCCCTTCGAAGCCTCGAAGCAGCAGCCACAACAACAACTGGAAGGGTAAAAATGTC
AACAACAACAAAAGAATGGAGAATTCCAATAATAACCCTGCCTTATCCGGTGGTGGAGGGTATAAGCCGCCGAGCTTGAATGATTTGCAAACACAAAACA
GAATGAAAGCGCGGAAATATTATCATCCAAAGAAGAAATTTAATAACCGTTTTGCGCCTTATGCGCCGAGGAATACGACGTCGTTTATTATCCGTGCGAA
AAAGTCTGGTGGGATTGCATCGTTGGTTTCGCCGTGTCCGGTGACTCCGGCGGTGTTGCCGACTCCGATATTTTCGCCATCGAGGGAGGTGTTGGGGGAT
ATGGCGAAGGAGGAGTGGGGTGTTGATGGGTATGGATCGATGAAGGGGTTGATTAGGTTGAGATCGCCGGGGAACGAAGCGAATGAGGATGAGGAAGATG
AAGAGGGAAATGGATCGAGTGAGAGTGATGTAGAGGAGCATGTGGAAGTGGAGAGGAGATTGGATCATGATTTGAGTAGGTTTGAGATGATTTATCCGAG
CGGCGGAGGAGGGGAGTATAGTTATAATAATGTTTTGGAGAATAGGGTTGATGATCAGGACACCCACATAGCGCAATTGGAAGAGGAGAATTTGACTTTG
AAAGAAAGATTGTTTTTGATGGAGAGGGAGTTGGGGGATTTGAGGAGGAGGTTGCAGTTTTTAGAGAGGCAGCAGCATCATCATCATGGGCAGAGCAGTA
GTGCTATGGTTGTGGAGGATGTTAATGAGGAGGTTGTGGAGAATGTTTCGGAGAATGATGAGAATGAGAGTGATGGAGTATCTGATATTGGTGGGAATAC
TGGAGGTGACGGTAACGAGGAGGTGATGGAGTATGTAGGTGGAAATGGAGAGAGAAGGAATGTTAGAGATGGTGGTAAGGAGGAGAGTAATGATGTTTGT
ATGGAAGAGAATGTACCTGATGATCACCTTATTGTGAAGCATAAGGTTAAGGATGAGAACGCAACTAGTGGATATGTAGACGAAGTGATTATTAAGGAAA
ATGAAGTTAAGGGTGGAGAAAGAGGAGACTGGTTTGTACCTACTGATGCAGAAACGGGGAAGGATGATGGAGCAAAGGATGAAGAAAGGGGAATTGAAGT
TTTACTAGACAGGGTGGTTGCAAAGGAGGAGGAGGAGCCTGTCCAAGGGTGA
AA sequence
>Potri.003G214300.1 pacid=42784504 polypeptide=Potri.003G214300.1.p locus=Potri.003G214300 ID=Potri.003G214300.1.v4.1 annot-version=v4.1
MNDQPPATIMNQQPPQLMSQAPPIPVMNPAQPPPPPISIQSQMLSHSQAMNQPQPLMMMNQRPYKKFQNQQQNPLKFNNNFVPSKPRSSSHNNNWKGKNV
NNNKRMENSNNNPALSGGGGYKPPSLNDLQTQNRMKARKYYHPKKKFNNRFAPYAPRNTTSFIIRAKKSGGIASLVSPCPVTPAVLPTPIFSPSREVLGD
MAKEEWGVDGYGSMKGLIRLRSPGNEANEDEEDEEGNGSSESDVEEHVEVERRLDHDLSRFEMIYPSGGGGEYSYNNVLENRVDDQDTHIAQLEEENLTL
KERLFLMERELGDLRRRLQFLERQQHHHHGQSSSAMVVEDVNEEVVENVSENDENESDGVSDIGGNTGGDGNEEVMEYVGGNGERRNVRDGGKEESNDVC
MEENVPDDHLIVKHKVKDENATSGYVDEVIIKENEVKGGERGDWFVPTDAETGKDDGAKDEERGIEVLLDRVVAKEEEEPVQG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G19900 PRLI-interacting factor, putat... Potri.003G214300
[exp]
0 1
AT1G80930 MIF4G domain-containing protei... Potri.016G121100
[exp]
1.41 0.9096
AT3G26560 ATP-dependent RNA helicase, pu... Potri.012G034200
[exp]
2.82 0.9069
AT1G55460 C2H2ZnF DNA/RNA-binding protein Kin17,... Potri.008G055300
[exp]
3.00 0.9061
AT3G50690 Leucine-rich repeat (LRR) fami... Potri.007G027500
[exp]
3.16 0.8931
AT1G56290 CwfJ-like family protein (.1) Potri.001G415900
[exp]
4.47 0.9040
AT5G30490 unknown protein Potri.010G151300
[exp]
5.38 0.8201
AT1G33520 MOS2 modifier of snc1, 2, D111/G-pa... Potri.003G104200
[exp]
6.00 0.8772
AT3G51650 unknown protein Potri.016G133700
[exp]
7.07 0.8765
Potri.008G016200
[exp]
8.83 0.8880
AT3G24490 Trihelix Alcohol dehydrogenase transcri... Potri.018G075500
[exp]
9.48 0.8473

Potri.003G214300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.