Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PRX1.10
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19890 422 / 3e-149 Peroxidase superfamily protein (.1) AT5G06720 372 / 2e-129 ATPA2 peroxidase 2 (.1) AT5G06730 369 / 7e-128 Peroxidase superfamily protein (.1) AT2G18140 328 / 5e-112 Peroxidase superfamily protein (.1) AT4G36430 327 / 1e-111 Peroxidase superfamily protein (.1) AT2G18150 325 / 1e-110 Peroxidase superfamily protein (.1) AT5G19880 311 / 1e-105 Peroxidase superfamily protein (.1) AT5G05340 308 / 3e-104 Peroxidase superfamily protein (.1) AT5G66390 308 / 7e-104 Peroxidase superfamily protein (.1) AT5G58400 307 / 7e-104 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G058200 [exp] 364 / 3e-126 AT5G06720 428 / 2e-151 peroxidase 2 (.1) Potri.003G214800 [exp] 351 / 1e-120 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.003G214700 [exp] 347 / 3e-119 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.001G011200 [exp] 332 / 2e-113 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 328 / 7e-112 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.001G011300 [exp] 324 / 3e-110 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.005G118700 [exp] 321 / 4e-109 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 320 / 6e-109 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.005G135300 [exp] 320 / 9e-109 AT1G49570 408 / 3e-143 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025535 [exp] 447 / 4e-157 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10026748 [exp] 443 / 4e-157 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10004163 [exp] 351 / 5e-121 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10008168 [exp] 343 / 1e-117 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10027989 [exp] 328 / 1e-111 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10027984 [exp] 326 / 1e-110 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10008173 [exp] 325 / 2e-110 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10009901 [exp] 324 / 2e-110 AT1G49570 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10041784 [exp] 321 / 3e-109 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10008167 [exp] 321 / 2e-108 AT5G06720 399 / 3e-139 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.003G214500.1 pacid=42787439 polypeptide=Potri.003G214500.1.p locus=Potri.003G214500 ID=Potri.003G214500.1.v4.1 annot-version=v4.1 ATGAAGAGGTCGAGCTGCTATAACGGTTATTCGTTGTTTCTGACAATATTGATGTTATGTGTAGTTGCCAGGTCCCAACTGACTACCGATTTCTATTCGA CAACATGTCCTAACCTTCTCCAAATTGTCCGTAGAGAAGTTCAGAAAGCTATCAAGTTCGAAACACGTATGGCAGCCTCTTTGATTCGGCTTCATTTTCA TGACTGCTTTGTCAATGGTTGTGATGCATCAGTTCTGCTGGATGGAAATGATGGTGAGAAGTTTGCTTTGCCTAACATAAACTCGGCAAGGGGATTTGAA GTTGTGGATGCAATAAAAACTGCTGTGGAAAGTCAATGTAGTGGCGTTGTATCTTGTGCTGATATACTAACCATAGCTGCCCGAGATTCGGTCCTCCTTA GTGGGGGGAAATCATGGAGAGTTCTGCTCGGAAGAAGAGATGGACTAGTGGCTAACCAGACTGGAGCAAATGCTAAACTTCCTTCCCCGTTTGAAGATGT GGATACGATCATCAACAAGTTTGCTGCAGTAGGATTAAATATCATAGACGTAGTCGCCTTATCCGGTGCTCACACAATTGGACAAGCAAGATGTGCCACC TTCAACAACAGATTGTTCAACTTCTCGGGAACCGGTGCTCCGGACAGTACAATGGAATCAAGTATGGTGTCTGATCTGCAAAATCTATGTCCACTAACTG ATGATGGCAACAAGACTACAGTTCTTGATCGGAACTCCACTGATCTATTTGACATCCACTATTTCCAGAACTTGCTAAACAATAAGGGTCTTCTCTCTTC TGACCAAGAACTATTTTCAAGTACCAATTTGACAACCAAAGCTCTGGTTCAGACCTATAGCACTAATCAAAATCTTTTCTTAAATGACTTTGCTAATTCC ATGATCAAAATGGGGAATATAAGCCCGCTAACAGGGTCTAGTGGAGAGATCAGGAAAAAATGTAGTGTGGTTAATTCGTGA
AA sequence Show only first row Show all	>Potri.003G214500.1 pacid=42787439 polypeptide=Potri.003G214500.1.p locus=Potri.003G214500 ID=Potri.003G214500.1.v4.1 annot-version=v4.1 MKRSSCYNGYSLFLTILMLCVVARSQLTTDFYSTTCPNLLQIVRREVQKAIKFETRMAASLIRLHFHDCFVNGCDASVLLDGNDGEKFALPNINSARGFE VVDAIKTAVESQCSGVVSCADILTIAARDSVLLSGGKSWRVLLGRRDGLVANQTGANAKLPSPFEDVDTIINKFAAVGLNIIDVVALSGAHTIGQARCAT FNNRLFNFSGTGAPDSTMESSMVSDLQNLCPLTDDGNKTTVLDRNSTDLFDIHYFQNLLNNKGLLSSDQELFSSTNLTTKALVQTYSTNQNLFLNDFANS MIKMGNISPLTGSSGEIRKKCSVVNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19890			Peroxidase superfamily protein...		Potri.003G214500 [exp]	0	1	PRX1.10
					Potri.013G070350 [exp]	1.41	0.9780
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176100 [exp]	2.23	0.9858	2OGox3
AT1G16310			Cation efflux family protein (...		Potri.010G172700 [exp]	2.44	0.9715
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G030100 [exp]	3.87	0.9739	CYP76G5
AT2G28780			unknown protein		Potri.009G028600 [exp]	4.35	0.9495
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Potri.008G048700 [exp]	5.47	0.9661
AT2G41705			camphor resistance CrcB family...		Potri.002G086800 [exp]	6.00	0.9538
AT4G17340		TIP2;2, DELTA-T...	tonoplast intrinsic protein 2;...		Potri.001G157000 [exp]	6.00	0.9699	TIP2.6
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.006G057900 [exp]	8.00	0.9740
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Potri.015G021900 [exp]	10.95	0.9612

Compare expression of checked genes

Potri.003G214500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.