Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PRX1.16
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06720 451 / 3e-160 ATPA2 peroxidase 2 (.1) AT5G06730 446 / 1e-157 Peroxidase superfamily protein (.1) AT2G38380 403 / 8e-141 Peroxidase superfamily protein (.1) AT2G38390 392 / 2e-136 Peroxidase superfamily protein (.1) AT3G32980 384 / 2e-133 Peroxidase superfamily protein (.1) AT3G49120 377 / 1e-130 PRX34, PRXCB, ATPERX34, PERX34, ATPCB PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) AT4G08770 377 / 2e-130 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT3G49110 376 / 2e-130 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT4G08780 375 / 1e-129 Peroxidase superfamily protein (.1) AT5G19880 350 / 2e-120 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G214700 [exp] 649 / 0 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.001G011200 [exp] 498 / 1e-178 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 486 / 1e-173 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.003G215001 [exp] 481 / 2e-171 AT5G06720 389 / 1e-135 peroxidase 2 (.1) Potri.001G011000 [exp] 478 / 2e-170 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011300 [exp] 469 / 3e-167 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G214900 [exp] 467 / 4e-166 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.001G013000 [exp] 462 / 2e-164 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.016G058200 [exp] 441 / 4e-156 AT5G06720 428 / 2e-151 peroxidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027989 [exp] 449 / 1e-158 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10008168 [exp] 442 / 5e-156 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10008173 [exp] 442 / 5e-156 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10008167 [exp] 439 / 1e-154 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10027984 [exp] 436 / 8e-154 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10008174 [exp] 418 / 1e-146 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10004163 [exp] 411 / 2e-144 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10027983 [exp] 407 / 4e-142 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10025535 [exp] 343 / 4e-116 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10026748 [exp] 338 / 2e-115 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.003G214800.1 pacid=42786837 polypeptide=Potri.003G214800.1.p locus=Potri.003G214800 ID=Potri.003G214800.1.v4.1 annot-version=v4.1 ATGATGGTAGATAAAGCAATGCATCCGTTACTAGCATCTCTTTTTCTTGTAATCTGGTTTGGAGGATCACTTCCCTATGCCTATGCTCAGCTGACTCCCA CATTCTACGATGGAACATGCCCGAATGTGAGCACCATCATTCGAGGAGTCCTTGTTCAGGCTTTGCAGACAGATCCCAGGATTGGAGCCAGCCTCATTCG ACTTCATTTCCATGATTGTTTTGTTGATGGTTGTGATGGATCGATTCTTTTGGACAACACTGATACTATAGAGAGTGAGAAAGAAGCTGCTCCAAATAAT AATTCAGCAAGGGGTTTTGATGTTGTTGATGACATGAAGGCTGCAGTAGAGAATGCTTGTCCTGGGATCGTCTCCTGTGCTGATATTCTCGCCATTGCAG CTGAAGAGTCTGTTCGTTTGGCAGGAGGACCCTCATGGACAGTTCCTTTGGGAAGAAGAGACAGCTTAATAGCAAACAGAAGTGGTGCTAATTCTGCCCT TCCGTCTCCCTTCGCGAGCCTTGATGTTCTCAAATCGAAGTTTGCAGCCGTGGGCCTCAACACCAGTAGTGACCTGGTTGCCCTTTCAGGTGCTCACACA TTTGGAAGGGCTCAATGTTCAAGTTTCAATCTTAGATTGTATAATTTTAGTGGCAGTGGCAATCCTGATCCAACACTGAACACAACCTATCTAGCAGAAC TTCAACAATTATGTCCTCAAGCTGGGAATGAGAGTGAGAGTGTTGTAACAAATCTTGATCCCACTACACCCGATACTTTCGATGGCAACTATTTTTCCAA TCTTCAAACCAATGAAGGCCTGCTTCGTAGTGATCAAGAGTTGTTTTCTACTACAGGTGCCGATACCATTGACATTGTCAACAATTTTAGTAGTAATCAG ACTGCATTCTTTGAAAGCTTTGTGGTGTCCATGATTAGAATGGGGAATATTAGCCCCTTAACCGGGACAGATGGAGAGATCAGATTGAATTGCAGAAGAG TCAACGACAACTCAACCGGATCAAATGCTCTCCTGGTTAGCTCAATTTAA
AA sequence Show only first row Show all	>Potri.003G214800.1 pacid=42786837 polypeptide=Potri.003G214800.1.p locus=Potri.003G214800 ID=Potri.003G214800.1.v4.1 annot-version=v4.1 MMVDKAMHPLLASLFLVIWFGGSLPYAYAQLTPTFYDGTCPNVSTIIRGVLVQALQTDPRIGASLIRLHFHDCFVDGCDGSILLDNTDTIESEKEAAPNN NSARGFDVVDDMKAAVENACPGIVSCADILAIAAEESVRLAGGPSWTVPLGRRDSLIANRSGANSALPSPFASLDVLKSKFAAVGLNTSSDLVALSGAHT FGRAQCSSFNLRLYNFSGSGNPDPTLNTTYLAELQQLCPQAGNESESVVTNLDPTTPDTFDGNYFSNLQTNEGLLRSDQELFSTTGADTIDIVNNFSSNQ TAFFESFVVSMIRMGNISPLTGTDGEIRLNCRRVNDNSTGSNALLVSSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G214800 [exp]	0	1	Pt-PRX1.16
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.012G138800 [exp]	8.42	0.9942	CHSL2
AT2G28790			Pathogenesis-related thaumatin...		Potri.001G237600 [exp]	8.83	0.9871
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.005G028000 [exp]	12.16	0.9942
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G006000 [exp]	14.89	0.9940	CYP81S3,Pt-CYP81.3
AT4G24340			Phosphorylase superfamily prot...		Potri.019G050200 [exp]	17.32	0.9939
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.009G054500 [exp]	19.36	0.9939
AT5G11130			Exostosin family protein (.1)		Potri.018G025200 [exp]	19.74	0.9936
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Potri.004G075300 [exp]	21.44	0.8780	GAD.3
AT4G29790			unknown protein		Potri.003G172701 [exp]	22.38	0.9347
AT1G47620		CYP96A8	"cytochrome P450, family 96, s...		Potri.005G094500 [exp]	23.06	0.9935	CYP96G1,Pt-CYP96.2

Compare expression of checked genes

Potri.003G214800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.