Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06720 389 / 1e-135 ATPA2 peroxidase 2 (.1) AT2G38380 383 / 6e-133 Peroxidase superfamily protein (.1) AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) AT2G38390 380 / 1e-131 Peroxidase superfamily protein (.1) AT3G49120 379 / 2e-131 PRX34, PRXCB, ATPERX34, PERX34, ATPCB PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) AT3G32980 375 / 6e-130 Peroxidase superfamily protein (.1) AT3G49110 371 / 3e-128 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT4G08770 366 / 2e-126 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT4G08780 365 / 4e-126 Peroxidase superfamily protein (.1) AT5G19890 329 / 4e-112 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G214900 [exp] 484 / 7e-173 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.001G011200 [exp] 482 / 5e-172 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G214800 [exp] 481 / 2e-171 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.003G214700 [exp] 476 / 2e-169 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.001G012901 [exp] 471 / 1e-167 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.001G013000 [exp] 464 / 4e-165 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011000 [exp] 460 / 2e-163 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011300 [exp] 455 / 1e-161 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.016G058200 [exp] 395 / 5e-138 AT5G06720 428 / 2e-151 peroxidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008173 [exp] 420 / 2e-147 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10008168 [exp] 418 / 1e-146 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10027984 [exp] 417 / 2e-146 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10027989 [exp] 417 / 2e-146 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10008167 [exp] 413 / 2e-144 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10008174 [exp] 399 / 3e-139 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10027983 [exp] 397 / 3e-138 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10004163 [exp] 373 / 2e-129 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10026748 [exp] 309 / 3e-104 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10025535 [exp] 312 / 1e-103 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.003G215001.2 pacid=42784989 polypeptide=Potri.003G215001.2.p locus=Potri.003G215001 ID=Potri.003G215001.2.v4.1 annot-version=v4.1 ATGCATCTTTCTAAAGTTATGTTTGTAGCTTTGTTCTATGCGTTTTTTGCAGGAGTAGCACCATTAGCTTATGGTCAGCTTACTCCAACATTTTATGATG AAACGTGTCCGAATGTGACCAGCATCATACGTGAAATCATTGAAGATACCTTGTTATCCGATGCTCGGATCGGTGCCAGCCTCATTAGGCTTCACTTCCA TGACTGCTTTGTTGATGGTTGTGATGCATCGATTTTGTTGGACAATACCGATACAATTGAGAGTGAGAAGGAAGCTTTGCCAAACAACAACTCTGCAAGA GGTTTTGATGTTATTGATAGAATGAAAGCCAGATTGGAGAGCTCTGAAAATTGTCCTGGCATAGTTTCATGTGCTGATATACTCGCAATTGCAGCTGAAG AATCTGTCGTTTTGGCTGGAGGTCCCTCATGGGCAGTTCCACTAGGAAGAAGAGATGGAACAACAGCGAACCGGGCTCTAGCAAATCTTTCCCTTCCGTC CCCCTTTGAGACCCTTGATGAAATCAAAGCTAAGTTCACTGCTGTTGGCCTGAATAACAATACTGATCTGGTTGCTCTATCTGGTGCTCACACATTCGGA CGGTCTCGATGTCAATTTTTCACAAACCGGTTGTATAATTTGAGTGATTGCAGTACCAATCCTCCACCAGATGATACATTGAACTCAACTTATCTAGCAA CACTCCGGGACTTGTGCCCTTGTAATGGGAATGGGAGTGTGCTTGCTGATCTTGATCCTACTACACCTGATGGTTTTGATAGTAACTATTTCTCCAATCT GCTAGTTGGGCAAGGCCTACTTCGGAGTGATCAACTACTGTTTTCGACTCCTGGGGCAGATACCGTTGACATTGTCAACAACTTTAGTGCAAATCAAACA GCTTTCTTTGAAAGCTTTGTCGTTTCCATGACAAGAATGGGGAATCTCAGCCTTTTGACAGGAACACAAGGGGAAATCAGATTGAACTGCCGTGTAGTTA ATGGAAATTCAACTGGACAAAATATTATGCTTGTTAGCTCAATTTAA
AA sequence Show only first row Show all	>Potri.003G215001.2 pacid=42784989 polypeptide=Potri.003G215001.2.p locus=Potri.003G215001 ID=Potri.003G215001.2.v4.1 annot-version=v4.1 MHLSKVMFVALFYAFFAGVAPLAYGQLTPTFYDETCPNVTSIIREIIEDTLLSDARIGASLIRLHFHDCFVDGCDASILLDNTDTIESEKEALPNNNSAR GFDVIDRMKARLESSENCPGIVSCADILAIAAEESVVLAGGPSWAVPLGRRDGTTANRALANLSLPSPFETLDEIKAKFTAVGLNNNTDLVALSGAHTFG RSRCQFFTNRLYNLSDCSTNPPPDDTLNSTYLATLRDLCPCNGNGSVLADLDPTTPDGFDSNYFSNLLVGQGLLRSDQLLFSTPGADTVDIVNNFSANQT AFFESFVVSMTRMGNLSLLTGTQGEIRLNCRVVNGNSTGQNIMLVSSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G215001 [exp]	0	1
AT5G62280			Protein of unknown function (D...		Potri.015G130500 [exp]	1.41	0.9614
AT3G21410			F-box and associated interacti...		Potri.005G114900 [exp]	2.00	0.9594
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.001G308300 [exp]	2.82	0.9534
AT5G37860			Heavy metal transport/detoxifi...		Potri.006G079400 [exp]	3.00	0.9543
AT3G25810			Terpenoid cyclases/Protein pre...		Potri.001G308200 [exp]	4.89	0.9445
					Potri.015G120500 [exp]	5.29	0.9484
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027800 [exp]	7.34	0.9424
					Potri.015G120600 [exp]	8.83	0.9516
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.002G128300 [exp]	10.53	0.8903
					Potri.011G126051 [exp]	12.80	0.8611

Compare expression of checked genes

Potri.003G215001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.