Plant FIBer expression Database

Pt-THFS.1,FTHFS2 (Potri.003G215100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-THFS.1,FTHFS2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G50480 1087 / 0 THFS 10-formyltetrahydrofolate synthetase (.1)
AT2G12280 137 / 1e-38 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
AT2G12200 89 / 1e-21 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G010800
[exp]
1153 / 0 AT1G50480 1123 / 0.0 10-formyltetrahydrofolate synthetase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013741
[exp]
1090 / 0 AT1G50480 1151 / 0.0 10-formyltetrahydrofolate synthetase (.1)
Lus10039200
[exp]
1081 / 0 AT1G50480 1137 / 0.0 10-formyltetrahydrofolate synthetase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF01268 FTHFS Formate--tetrahydrofolate ligase
Representative CDS sequence
>Potri.003G215100.1 pacid=42786105 polypeptide=Potri.003G215100.1.p locus=Potri.003G215100 ID=Potri.003G215100.1.v4.1 annot-version=v4.1
ATGAGTGCATCAAAAACAGTGAGGAAGGTGGAGGTGTTGTCACCAGTACCTGCAGACATAGAAATTGCTAACTCAGTTGAACCTTTTCACATATCAGAGA
TTGCTAAAGACCTGAATCTTAGTCCTAAACATTATGATCTTTATGGAAAATACAAGGCCAAGGTACTGTTGTCTGTGCTTGATGAGCTTGAAGGATCAGG
AGATGGGTACTATGTGGTGGTTGGAGGTATTACTCCTACACCACTTGGAGAAGGAAAGTCTACTACTACTGTTGGCCTCTGTCAAGCTTTGGGTGCATTT
CTTGATAAAAAGGTTGTTACCTGCCTTCGTCAACCATCGCAAGGACCAACTTTTGGAATAAAAGGAGGTGCAGCAGGTGGTGGTTATAGTCAAGTAATTC
CAATGGATGAATTCAATCTTCATCTAACAGGAGATATTCATGCAATAACAGCTGCAAATAATCTCCTAGCAGCTGCTATTGATACCCGGGTTTTCCATGA
GTCTACCCAGTCAGACAAGGCTCTTTTAAACCGCTTATGCCCACCAAACAAAGAAGGAAAAAGAAGCTTTAGTGACATAATGTTTCGGCGTCTGAAGAAG
CTTGGTATCTCCAAGACCAAGCCCGAGGAACTCTCACCACAAGAAGTAAAGAAGTTTGCTAGGCTTGATATTGACCCAGCTTCCATAACATGGAGGAGAG
TAATGGATGTCAATGATAGGTTCTTGAGAAAGATTACTGTTGGCCAAGGTCCTGAAGAAAAAGGGATGGTGAGAGAAACAGGATTTGATATTTCTGTAGC
TAGTGAGATAATGGCAGTTTTGGCCCTCACAACATCTCTAGCTGATATGAGAGAGAGGCTTGGTAAAATGGTGATCGGAAATAGCAAGGCTGGTGACCCT
GTAACAGCTGATGATCTTGGTGTTGGAGGTGCCTTGACTGTACTGATGAAGGATGCTATCAACCCTACTTTAATGCAGACTCTTGAAGGAACTCCCGTTC
TTGTTCATGCTGGTCCCTTTGCGAACATTGCTCATGGAAATTCTTCCATTGTGGCTGACAAGATTGCACTGAAGCTGGCTGGACCAGGTGGGTTTGTGGT
CACAGAAGCAGGTTTTGGTTCTGATATTGGAACTGAAAAGTTCATGAACATAAAGTGCCGATATAGCAGTTTAACTCCTCAGTGTGCTGTTATTGTTGCA
ACAATTAGGGCCCTGAAAATGCATGGTGGTGGGCCAGAAGTGGTTGCTGGGAAGCCTCTTGACCGTGCCTACACAACTGAGAACGTGTCTTTGGTTGAAG
CTGGTTGTGTGAATTTAGCTAGGCATATTTCTAATACAAAGGCTTATGGTGTAAATGTTGTTGTCGCTGTTAACATGTTTGCAACTGATTCAGAAGCAGA
ACTTAATGCAGTCAGAAATGCAGCTTTGGCTGCTGGGGCATATGATGCTGTTGTCTGTACACACCATGCTCATGGTGGGAAAGGAGCAGTGGACCTTGGA
ATTGCAGTTCAAAAGGCATGTGAGAATGTGACACAGCCATTGAAGTTCTTATATCCTTTGGATATTAGTATTAAAGAGAAAATAGAGGCAATAGCAAGGT
CCTACGGTGCTAGTGGTGTTGAATACTCAGAGCAGGCTGAGAAACAAATTGAGATGTACAGTAAGCAAGGGTTCTCCGGTCTGCCCATCTGTATGGCCAA
AACCCAGTATTCATTTTCACACAACGCGGCTGAGAAAGGAGCCCCCACTGGATTTTCTTTACCAATAAGAGATGTGAGGGCAAGCATTGGTGCTGGTTTC
ATCTGTCCTTTGGTTGGGACAATGAGTACAATGCCAGGGCTTCCCACAAGGCCTTGCTTTTATGACATTGATCTCGACACTGCCACGGGCAAGGTCATTG
GTCTCTCTTGA
AA sequence
>Potri.003G215100.1 pacid=42786105 polypeptide=Potri.003G215100.1.p locus=Potri.003G215100 ID=Potri.003G215100.1.v4.1 annot-version=v4.1
MSASKTVRKVEVLSPVPADIEIANSVEPFHISEIAKDLNLSPKHYDLYGKYKAKVLLSVLDELEGSGDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF
LDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRVFHESTQSDKALLNRLCPPNKEGKRSFSDIMFRRLKK
LGISKTKPEELSPQEVKKFARLDIDPASITWRRVMDVNDRFLRKITVGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDP
VTADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLAGPGGFVVTEAGFGSDIGTEKFMNIKCRYSSLTPQCAVIVA
TIRALKMHGGGPEVVAGKPLDRAYTTENVSLVEAGCVNLARHISNTKAYGVNVVVAVNMFATDSEAELNAVRNAALAAGAYDAVVCTHHAHGGKGAVDLG
IAVQKACENVTQPLKFLYPLDISIKEKIEAIARSYGASGVEYSEQAEKQIEMYSKQGFSGLPICMAKTQYSFSHNAAEKGAPTGFSLPIRDVRASIGAGF
ICPLVGTMSTMPGLPTRPCFYDIDLDTATGKVIGLS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G50480 THFS 10-formyltetrahydrofolate synt... Potri.003G215100
[exp]
0 1 Pt-THFS.1,FTHFS2
AT5G65780 ATBCAT-5 branched-chain amino acid amin... Potri.007G008000
[exp]
2.64 0.7226
AT5G63060 Sec14p-like phosphatidylinosit... Potri.015G080100
[exp]
24.00 0.6449
AT5G63980 SUPO1, RON1, AL... suppressors of PIN1 overexpres... Potri.007G105100
[exp]
44.42 0.6480
AT3G53140 O-methyltransferase family pro... Potri.006G120000
[exp]
45.89 0.6397 COMTL4
AT2G17870 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN ... Potri.005G174300
[exp]
46.07 0.6410
AT1G10180 unknown protein Potri.012G120000
[exp]
49.89 0.5795
AT5G59950 RNA-binding (RRM/RBD/RNP motif... Potri.016G093944
[exp]
53.66 0.6215
AT1G79870 D-isomer specific 2-hydroxyaci... Potri.001G183700
[exp]
59.74 0.5727
AT5G19440 NAD(P)-binding Rossmann-fold s... Potri.009G057500
[exp]
62.16 0.6177 CCR.8
AT1G52720 unknown protein Potri.001G174300
[exp]
63.06 0.5745

Potri.003G215100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.