Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60550 329 / 2e-110 ATSNAK1, GRIK2 geminivirus rep interacting kinase 2 (.1) AT3G45240 327 / 5e-110 ATSNAK2, GRIK1 geminivirus rep interacting kinase 1 (.1.2.3) AT3G01090 152 / 1e-41 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT2G26980 147 / 1e-40 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT2G34180 149 / 2e-40 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT5G35410 148 / 2e-40 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT2G25090 146 / 2e-39 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT5G45810 146 / 2e-39 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT3G29160 144 / 2e-39 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3) AT4G24400 143 / 9e-39 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G010700 [exp] 530 / 0 AT3G45240 370 / 1e-127 geminivirus rep interacting kinase 1 (.1.2.3) Potri.009G012900 [exp] 339 / 4e-114 AT5G60550 535 / 0.0 geminivirus rep interacting kinase 2 (.1) Potri.006G068400 [exp] 151 / 1e-41 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.013G090800 [exp] 149 / 2e-40 AT3G01090 728 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.010G002500 [exp] 148 / 2e-40 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.017G087900 [exp] 149 / 3e-40 AT3G01090 880 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.004G115900 [exp] 149 / 3e-40 AT3G01090 879 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.006G062800 [exp] 143 / 3e-38 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.002G177900 [exp] 142 / 3e-38 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041298 [exp] 342 / 1e-115 AT5G60550 532 / 0.0 geminivirus rep interacting kinase 2 (.1) Lus10037414 [exp] 338 / 1e-113 AT5G60550 533 / 0.0 geminivirus rep interacting kinase 2 (.1) Lus10024075 [exp] 150 / 5e-41 AT5G10930 572 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10018334 [exp] 148 / 2e-40 AT3G17510 441 / 6e-153 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Lus10001290 [exp] 151 / 7e-40 AT3G01090 931 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10019411 [exp] 147 / 7e-40 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10012696 [exp] 148 / 1e-39 AT3G01090 905 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10034212 [exp] 142 / 2e-38 AT5G45820 473 / 5e-166 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10029054 [exp] 142 / 3e-38 AT5G58380 483 / 4e-169 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10030210 [exp] 142 / 3e-38 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.003G215201.2 pacid=42784865 polypeptide=Potri.003G215201.2.p locus=Potri.003G215201 ID=Potri.003G215201.2.v4.1 annot-version=v4.1 ATGACAAATCATCGGAATCCGAAGAGGCCTGTTTTACCCATGACCTGCACATCCAATCTGTTCTCTCAAGAGTGTGCGAGCAACATTGACTGTCGACAAG ATGATGCAGAGAACATTTTCTACCAAGACTTATCCTGTGGGATTTTTCCTGTTGATAAGAATGAAGAACAATCAATACCATACTCACCAAGGAAGGCTCA GGCTTGTAAGAAGATCCCTGTTACAGTTACCACATTTGTAAGGCATTCTAAGTACTCAAATGGAAGAAAGATGATCAACGAGTATGTAAAAGAGAGGAGG ATCAACCAAGGAAGCTATGGTAAAGTGGTACTCTATCGAAACAGTAACAGTGGAACTCCTTATGCTATTAAGGTTATTTGCAAGTCTCGTTTGCGCAAAT TTCGCATCACAGGATCAGAAACAGCCATGGCTGATGTTCTCAGAGAAGTATCCATATTGAAAACTTTGGAACATCCAAACATAATCAACCTAGTTGAGGT GATTGATGACCAAAAATCAGATTATCTGTATATGGTTCTTGAATATGTGGAAAGCAGTACTGTGAGCAACATTTTGGAGACGAAAGGACGGATTGATGAA ACAACTGCAAGAAGATATTTCAAGGATGTAATTGCTGGTCTCATTTATTTGCATCATCATAATATTGTGCATGGTGATATTAAGCCAGAAAACCTTTTGG TCACTGCTAGTGGAAGGGTGAAAATAGTTGATTTCAGCTTTGGCCATGCCTTTGAGGATGACAATGATGAGCTATTGAGATGTCCTGGAACTCTAGCTTT CACTGCACCAGAGTGTTGTTCAGATACAGTTTACCATGGAAAAGCTGCTGATATATGGGCTGTGGGGGTTACCTTATACTCTATGGTGCTCGGTTTCTGC CCTTTTCTTGCTGATAGTGTACCTGAAACTTGTGACAAGATTGTTAATAGTCCTTTACCACTTCCAGAAGAATTAGATTCCGAGCTCAAAGATCTTCTGC AAGGCCTTCTCTGCAAAGGTAACACAGATCCAATGCAAAGAATTACCTTGGATGATGTAGCTGAGCATCCATGGGTGGTCAAAGAGGGTGGTCCAGTCCC TATAAACTGCTTATGCAGCTGCAGGTAG
AA sequence Show only first row Show all	>Potri.003G215201.2 pacid=42784865 polypeptide=Potri.003G215201.2.p locus=Potri.003G215201 ID=Potri.003G215201.2.v4.1 annot-version=v4.1 MTNHRNPKRPVLPMTCTSNLFSQECASNIDCRQDDAENIFYQDLSCGIFPVDKNEEQSIPYSPRKAQACKKIPVTVTTFVRHSKYSNGRKMINEYVKERR INQGSYGKVVLYRNSNSGTPYAIKVICKSRLRKFRITGSETAMADVLREVSILKTLEHPNIINLVEVIDDQKSDYLYMVLEYVESSTVSNILETKGRIDE TTARRYFKDVIAGLIYLHHHNIVHGDIKPENLLVTASGRVKIVDFSFGHAFEDDNDELLRCPGTLAFTAPECCSDTVYHGKAADIWAVGVTLYSMVLGFC PFLADSVPETCDKIVNSPLPLPEELDSELKDLLQGLLCKGNTDPMQRITLDDVAEHPWVVKEGGPVPINCLCSCR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Potri.003G215201 [exp]	0	1
AT2G29590			Thioesterase superfamily prote...		Potri.009G042100 [exp]	2.64	0.8068
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G156200 [exp]	3.74	0.8473
AT2G36210			SAUR-like auxin-responsive pro...		Potri.006G211000 [exp]	6.00	0.8279
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Potri.006G099600 [exp]	6.00	0.8099
AT1G13340			Regulator of Vps4 activity in ...		Potri.010G127000 [exp]	6.16	0.8337
AT5G46080			Protein kinase superfamily pro...		Potri.004G049200 [exp]	7.48	0.7989
AT5G47635			Pollen Ole e 1 allergen and ex...		Potri.016G006200 [exp]	11.83	0.8220
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Potri.007G081000 [exp]	18.43	0.8189	SK3
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Potri.001G070301 [exp]	18.89	0.7683
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Potri.003G117000 [exp]	22.13	0.7740	Pt-PAK.1

Compare expression of checked genes

Potri.003G215201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.