Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58040 472 / 3e-169 SINAT2 seven in absentia of Arabidopsis 2 (.1) AT2G41980 459 / 3e-164 Protein with RING/U-box and TRAF-like domains (.1) AT3G61790 434 / 4e-154 Protein with RING/U-box and TRAF-like domains (.1) AT4G27880 424 / 6e-150 Protein with RING/U-box and TRAF-like domains (.1) AT5G53360 348 / 8e-122 TRAF-like superfamily protein (.1) AT3G13672 251 / 1e-83 TRAF-like superfamily protein (.1.2) AT5G37870 110 / 3e-28 Protein with RING/U-box and TRAF-like domains (.1) AT5G62800 108 / 6e-27 Protein with RING/U-box and TRAF-like domains (.1) AT5G37930 96 / 1e-22 Protein with RING/U-box and TRAF-like domains (.1) AT5G37890 94 / 4e-22 Protein with RING/U-box and TRAF-like domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G010500 [exp] 561 / 0 AT3G58040 455 / 3e-163 seven in absentia of Arabidopsis 2 (.1) Potri.006G194100 [exp] 470 / 2e-168 AT3G58040 560 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.016G059700 [exp] 466 / 5e-167 AT3G58040 548 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.002G171500 [exp] 435 / 2e-154 AT3G61790 558 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.014G099200 [exp] 433 / 1e-153 AT3G61790 551 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.012G015500 [exp] 433 / 1e-153 AT4G27880 542 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.T126006 [exp] 431 / 4e-153 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G198600 [exp] 431 / 4e-153 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.015G013000 [exp] 429 / 6e-152 AT4G27880 546 / 0.0 Protein with RING/U-box and TRAF-like domains (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013739 [exp] 533 / 0 AT3G58040 493 / 6e-178 seven in absentia of Arabidopsis 2 (.1) Lus10039202 [exp] 526 / 0 AT3G58040 488 / 1e-175 seven in absentia of Arabidopsis 2 (.1) Lus10022405 [exp] 431 / 1e-152 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10018110 [exp] 431 / 1e-152 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10004001 [exp] 429 / 3e-152 AT3G61790 525 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10002761 [exp] 429 / 1e-151 AT3G61790 462 / 1e-164 Protein with RING/U-box and TRAF-like domains (.1) Lus10016348 [exp] 426 / 4e-150 AT3G61790 459 / 7e-163 Protein with RING/U-box and TRAF-like domains (.1) Lus10030248 [exp] 423 / 1e-149 AT3G61790 514 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10009111 [exp] 61 / 1e-10 AT5G37930 134 / 5e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10028535 [exp] 60 / 2e-10 AT5G37930 134 / 7e-38 Protein with RING/U-box and TRAF-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [poplar] [flax] TRAF PF03145 [poplar] [flax] Sina Seven in absentia protein family
Representative CDS sequence Show only first row Show all	>Potri.003G215400.2 pacid=42784550 polypeptide=Potri.003G215400.2.p locus=Potri.003G215400 ID=Potri.003G215400.2.v4.1 annot-version=v4.1 ATGGCCCCAGGAGGCATCATCAACAAGGAAGAGATCGAGTCACGCATTGCGTACTTGGATCATGATACGGGCCATCCGGCGACTTCTAATGCTGAGTTAA GAGGCTCCCCTTTTAGAAAAGCTGCAACACCTTCCACTGGGAATCCTGGAAAACAATCAACTAGTAACATGCAAGACCTTCTTGATTGTCCTGTTTGTTT CACCATAATGTATCCTCCAATTTTCCAGTGTCCAAATGGCCACACTCTATGTTCACACTGCAGGGCCAGAGTGAAGAACTCTTGCCCAATTTGCCGAGGA GAACTAGGAAATATAAGGTGCTTGGCTCTGGAGAAAATTGCCGAGTCAATAGAACTCCCCTGCAAATACCAAAGTATGGGATGTTGTGACATATTTCCCT ACTACAGCAAGCCAAAACATGAAAAGAACTGCAAATATCGCCCATACAACTGCCCTTATGCTGGAGCTGAATGTTCTGTCACCGGTGACATCCCGCTCCT TGTCAAGCATCTCAGAAACGAACACAAAGTTGACATGCATGATGGATGCACCTTCAATCACAGATATGTCAAGTCTGATCCCCGAGAAATCGACAATGCC ACATGGATGTTAACTGTTTTCAATTGTTTCGGCCGACAGTTTTGCCTGCACTTTGAGACATTTCATCTAGGAATGTCACCTGTTTACATGGCCTTCCTGA GATTCATGGGTACAGAAGATGAGGCAAGAGAATTTAGTTACAGTCTTGAAGTTGGTGGAAATGGTAGAAAGCTTACATGGCAAGGAGTTCCGAGAAGTAT CCGGGATAGCCATCAGAAAGTTCGAGACAGCCAAGATGGATTGATCATTCAGAGAAACTTGGCACTTTTCTTTTCTGGAGGGGAACGGCAGGAGTTAAAA CTGAAAGTTTCTGGACGGATATGGAAAGAACAGTGA
AA sequence Show only first row Show all	>Potri.003G215400.2 pacid=42784550 polypeptide=Potri.003G215400.2.p locus=Potri.003G215400 ID=Potri.003G215400.2.v4.1 annot-version=v4.1 MAPGGIINKEEIESRIAYLDHDTGHPATSNAELRGSPFRKAATPSTGNPGKQSTSNMQDLLDCPVCFTIMYPPIFQCPNGHTLCSHCRARVKNSCPICRG ELGNIRCLALEKIAESIELPCKYQSMGCCDIFPYYSKPKHEKNCKYRPYNCPYAGAECSVTGDIPLLVKHLRNEHKVDMHDGCTFNHRYVKSDPREIDNA TWMLTVFNCFGRQFCLHFETFHLGMSPVYMAFLRFMGTEDEAREFSYSLEVGGNGRKLTWQGVPRSIRDSHQKVRDSQDGLIIQRNLALFFSGGERQELK LKVSGRIWKEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.003G215400 [exp]	0	1
AT3G54800			Pleckstrin homology (PH) and l...		Potri.010G223400 [exp]	1.00	0.8002
AT2G15730			P-loop containing nucleoside t...		Potri.004G143300 [exp]	9.00	0.7407
AT3G15260			Protein phosphatase 2C family ...		Potri.011G116700 [exp]	18.89	0.6688
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Potri.007G028000 [exp]	31.49	0.6846
AT2G01990			unknown protein		Potri.008G140900 [exp]	31.84	0.6524
AT4G35560		DAW1	DUO1-activated WD40 1, Transdu...		Potri.005G101600 [exp]	33.70	0.6016
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.019G128500 [exp]	34.05	0.7107
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.008G112600 [exp]	38.15	0.6772
AT1G76740			unknown protein		Potri.002G066450 [exp]	52.13	0.6678
AT2G14120		DRP3B	dynamin related protein (.1.2....		Potri.012G125300 [exp]	52.53	0.6529

Compare expression of checked genes

Potri.003G215400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.