Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13670 1060 / 0 Protein kinase family protein (.1) AT2G25760 966 / 0 Protein kinase family protein (.1.2) AT5G18190 941 / 0 Protein kinase family protein (.1) AT3G03940 934 / 0 Protein kinase family protein (.1) AT3G03930 349 / 1e-115 protein kinase-related (.1) AT2G19470 190 / 3e-53 CKL5 casein kinase I-like 5 (.1) AT4G26100 190 / 3e-53 CKL1, CK1 casein kinase 1 (.1) AT1G03930 190 / 5e-53 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G44100 190 / 7e-53 CKL7 casein kinase I-like 7 (.1) AT4G28860 187 / 8e-53 CKL4 casein kinase I-like 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009700 [exp] 1257 / 0 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.018G046400 [exp] 1013 / 0 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 1002 / 0 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.019G034500 [exp] 960 / 0 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.001G189100 [exp] 952 / 0 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.003G049700 [exp] 931 / 0 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.006G147800 [exp] 192 / 7e-54 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 192 / 2e-53 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 191 / 3e-53 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042455 [exp] 1111 / 0 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10039203 [exp] 1106 / 0 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10026214 [exp] 1045 / 0 AT3G13670 1085 / 0.0 Protein kinase family protein (.1) Lus10005479 [exp] 976 / 0 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10013737 [exp] 958 / 0 AT3G13670 979 / 0.0 Protein kinase family protein (.1) Lus10025827 [exp] 920 / 0 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10014152 [exp] 889 / 0 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10037565 [exp] 876 / 0 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2) Lus10024261 [exp] 875 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10023628 [exp] 860 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G215700.1 pacid=42785021 polypeptide=Potri.003G215700.1.p locus=Potri.003G215700 ID=Potri.003G215700.1.v4.1 annot-version=v4.1 ATGCCTGAGCTTAGAAGAAATCGCGCAAGGTTAGCGCGAAATCAACAACAACAGAAGCAAACAGACCCTCCAGTTGCGAGAAATTACGTGAAGACCCGTG CTGCTGTAGCTAGAGAAGCGAAGAAGAGACCGAGGACAAGATTGGAAGCGAAAAGGTTGAAAGAGAAGGAAGAAGAAGGTGATAATAGTAATAGGAATAG GAATAGTAATAGTAATAGAAGAGTTGAGGAGGAGGAGGAGGGTAAAAGGGTAATTTTGATATCAGAGAGTGATAAGAAAGGAAAGAATTTGCTAGTTGAT ATTGAAGAAGAAGAGAAAGTTGAAAAATTGAAAGGTCCAATGGCTGATGATAGTGGAGGTTTAAGTGCTAATAAAGCTGGTGGCCAAGAAGAAGAGGGGA ACAATGCTCCTTTCCCTGATAAGGTTCAAGTGGGAGGGTCACCTTTATATAGGATAGAAAGGAAGTTGGGGAAAGGTGGTTTTGGTCAGGTGTTTGTTGG TCGTCGTGCTAATGGTGGAAATGAACGTGCGACGGGTTCTGGTGCCCTGGAGGTGGCCCTGAAATTTGAGCACAGAAACAGCAAAGGCTGTAATTATGGC CCTCCGTATGAATGGCAAGTTTACAACACACTTGGTGGTAGTCATGGTGTGCCAAGAGTACACTATAAAGGAAGGCAAGGAGACTATTATGTAATGGTTA TGGACATGTTGGGCCCTAGCCTCTGGGATGTATGGAATTCTTCTGGGCAGACGATGTCCTCAGAAATGGTAGCTTGTATTGCAGCTGAGTCTCTCTCAAT TTTGGAGAAGATGCACTCAAGAGGCTATGTGCATGGAGATGTAAAGCCTGAAAACTTTTTACTTGGTCAGCCATCTACACCTCAAGAGAAGAAGTTATTT CTTGTTGACCTTGGATTAGCAACAAAGTGGAAAGACAGCAGTACTGGACAACATGTTGAATATGATCAGCGCCCTGATATGTTTAGGGGAACTGTTCGAT ATGCTAGTGTTCATGCTCATTTGGGAAGAACTGCCAGTAGGAGAGATGATCTTGAATCTCTTGCTTATACACTCATCTTCCTTCACAAAGGCAGATTGCC ATGGCAGGGCTACCAGGGTGACAATAAGTCCTTCTTGGTTTGCAAAAAGAAGATGGCAACATCTCCAGAGATGCTGTGCTGCTTCTGTCCTCCTCCTTTC AGACAGTTTTTTGAAATCGTGGTGAATATGAAATTTGACGAGGAGCCCAACTATTCAAAGTTAATATCTTTGTTTGAGAGCTTGATAGGACCAAATCCAG CTATAAGACCAATAAACACAGAGGGTGCTCAAAAGATCATTTGTCAAGTTGGTCAAAAACGTGGTAGGCTGAATATCGAGGAGGAAGAAGATGATGGGCA ACCTAAGAAGAAAGTCCGTCTTGGAGTTCCTGCTACACAATGGATTTCTATTTACAACGCTAAGCCACCAATGAAACAGAGGTACCATTATAATGTTGCT GATGGAAGGCTGGGTCAACATGTGGAGAGAGGAATTGCTGATGGTCTGCTTATAAGCTGTGTTGCATCTTCTTCCAATCTTTGGGCATTAATAATGGATG CTGGAACTAATTTTACAAGCCAAGTTTATGAACTATCACCTTTTTTCTTACACAAGGAATGGATAATGGAACAATGGGAGAAGAACTATTACATCAGTTC CATCGCTGGTTCTAACAATGGAAGCTCTCTCGTGGTGATGTCCAAAGGCACTCAATACACTCAACAGTCTTACAAAGTAAGCGATTCTTTTCCCTTTAAG TGGATAAACAAGAAGTGGAGAGAAGGGTTTTATGTGACTTCAATGGCTACTGCTGGAACCCGCTGGGGTGTTGTCATGTCACGCAATGCAGGCTTCAGTG ATCAGGTTGTGGAGCTTGATTTTCTGTATCCAAGTGAGGGCATTCACAGAAGGTGGGATACTGGCTTTAGAATTACATCAACTGCTGCAACCTTTGATCA AGCTGCTCTCATCTTGAGTGTCCCTAAGCGCAAACCTGGAGATGAAACCCAGGAAACTTTACGCACATCTCAATTTCCAAGCACTCATGTTAAGGAAAAG TGGGCGAAGAACCTCTATCTTGCGTGTTTGTGCTATGGGAGGACTGTTTCTTAA
AA sequence Show only first row Show all	>Potri.003G215700.1 pacid=42785021 polypeptide=Potri.003G215700.1.p locus=Potri.003G215700 ID=Potri.003G215700.1.v4.1 annot-version=v4.1 MPELRRNRARLARNQQQQKQTDPPVARNYVKTRAAVAREAKKRPRTRLEAKRLKEKEEEGDNSNRNRNSNSNRRVEEEEEGKRVILISESDKKGKNLLVD IEEEEKVEKLKGPMADDSGGLSANKAGGQEEEGNNAPFPDKVQVGGSPLYRIERKLGKGGFGQVFVGRRANGGNERATGSGALEVALKFEHRNSKGCNYG PPYEWQVYNTLGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNSSGQTMSSEMVACIAAESLSILEKMHSRGYVHGDVKPENFLLGQPSTPQEKKLF LVDLGLATKWKDSSTGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMATSPEMLCCFCPPPF RQFFEIVVNMKFDEEPNYSKLISLFESLIGPNPAIRPINTEGAQKIICQVGQKRGRLNIEEEEDDGQPKKKVRLGVPATQWISIYNAKPPMKQRYHYNVA DGRLGQHVERGIADGLLISCVASSSNLWALIMDAGTNFTSQVYELSPFFLHKEWIMEQWEKNYYISSIAGSNNGSSLVVMSKGTQYTQQSYKVSDSFPFK WINKKWREGFYVTSMATAGTRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDTGFRITSTAATFDQAALILSVPKRKPGDETQETLRTSQFPSTHVKEK WAKNLYLACLCYGRTVS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13670			Protein kinase family protein ...		Potri.003G215700 [exp]	0	1
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.018G047700 [exp]	1.73	0.7778
AT3G50690			Leucine-rich repeat (LRR) fami...		Potri.005G124700 [exp]	2.44	0.8083
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.004G124000 [exp]	4.00	0.7617	ATHMG.2
AT3G43590			zinc knuckle (CCHC-type) famil...		Potri.004G193500 [exp]	4.24	0.7483
AT1G18610			Galactose oxidase/kelch repeat...		Potri.012G062100 [exp]	6.00	0.7333
AT3G13670			Protein kinase family protein ...		Potri.001G009700 [exp]	16.43	0.7372
AT1G21920			Histone H3 K4-specific methylt...		Potri.005G175800 [exp]	16.73	0.6925
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.004G040000 [exp]	20.24	0.7563
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Potri.001G135900 [exp]	20.59	0.7444
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G091200 [exp]	21.16	0.7469

Compare expression of checked genes

Potri.003G215700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.