Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CMT3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69770 220 / 2e-61 CMT3 chromomethylase 3 (.1) AT1G80740 186 / 2e-49 DMT4, CMT1 DNA METHYLTRANSFERASE 4, chromomethylase 1 (.1) AT4G19020 183 / 4e-48 CMT2 chromomethylase 2 (.1) AT5G49160 82 / 1e-15 MET2, DMT1, DMT01, DDM2, METI, MET1 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) AT4G14140 80 / 4e-15 MET02, DMT2, DMT02, MET2 DNA METHYLTRANSFERASE 02, DNA methyltransferase 2 (.1.2) AT4G13610 79 / 5e-15 MEE57 maternal effect embryo arrest 57, DNA (cytosine-5-)-methyltransferase family protein (.1) AT4G08990 78 / 1e-14 DNA (cytosine-5-)-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009600 [exp] 445 / 3e-144 AT1G69770 852 / 0.0 chromomethylase 3 (.1) Potri.003G100000 [exp] 179 / 5e-47 AT4G19020 1017 / 0.0 chromomethylase 2 (.1) Potri.T046100 [exp] 87 / 3e-17 AT5G49160 1802 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.018G138000 [exp] 86 / 7e-17 AT5G49160 1800 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.004G134000 [exp] 85 / 9e-17 AT5G49160 1805 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.007G090150 [exp] 67 / 1e-13 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017720 [exp] 239 / 5e-68 AT1G69770 855 / 0.0 chromomethylase 3 (.1) Lus10014315 [exp] 225 / 8e-63 AT1G69770 836 / 0.0 chromomethylase 3 (.1) Lus10026024 [exp] 218 / 2e-60 AT1G69770 824 / 0.0 chromomethylase 3 (.1) Lus10010796 [exp] 186 / 6e-50 AT4G19020 790 / 0.0 chromomethylase 2 (.1) Lus10033679 [exp] 93 / 3e-21 AT1G69770 89 / 2e-20 chromomethylase 3 (.1) Lus10019220 [exp] 84 / 3e-16 AT5G49160 1706 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10004295 [exp] 84 / 4e-16 AT5G49160 1783 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00145 [poplar] [flax] DNA_methylase C-5 cytosine-specific DNA methylase CL0063 [poplar] [flax] PF01426 [poplar] [flax] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Potri.003G215800.5 pacid=42786144 polypeptide=Potri.003G215800.5.p locus=Potri.003G215800 ID=Potri.003G215800.5.v4.1 annot-version=v4.1 ATGCCGCGAAAACGACAGCGCAGCACGACGACAAAACCAGAAGCGGCAGCGTCTACTTCTTCTTCAACTAAGCAAAAGAAGACGGCGGCGAAGCCGAAAC GTACTTGGTTGAGAAAAGTAGAGAAGGAAGAGGAAGAGGAAGAGGAAGTGTTTGTTTTGGAAGGAGATGAGGATGACACGAACTCGGTGGATGAAGTCGG AGCTAGGATGGGGACTGGTAGTGCCGATTCTAGACCTGACACGAAGGAGAAGCGTGGATCTGGTAAAGCTGAGAAGAAGATATCGACGCCTGTGAAGGTT AAGGAGGATGAAACGCCGGCGAGGTTTGTCGGAGCTCAGATTCCTGGTGCTGAAGCCAGAAAGAAGTGGCCTCATCGATATGCTAATAAGTTTAGAAGGA CAATTTGGCTTGATGTTGATTTTAGTTTCATGATGATGGTGTTTTTGAGTCTATTGTTGTTTAAGTCGTTGACTAAGTACAGCGTCTCGGATGATTCCGA AGAGATCGTAAAAGCTAGATGTCACTACACACGGGCAGAGGTTGATAGGATCATCTATGATCTCTACTATGATGCTCATGTCCAAGCTTCTGATGGAGAA CCAGACTATATATGCAGGATAAGTGAGATGTTTGAGTCTGTAGACAGGACCCTATATTTTACTACTCAATGGTACTATCGATCCACTGTCACGATCATTA AAGATAAGTACATTTCGGATCCAAAGTGTGTTTTCTTTTCTGAGATTCGAAATGACAATCCCTTGGAGTGTCTTACATGGAAGCTGAACATTGTTAGATT GGCACTCAATGTGGATCCGGAGAATAGACGAGCAAGGTCCTCCGGTTGTGATTTCTATTGTGACATGCTTTATTTGCTTCCATATTCTACCTTCGTCAGG TTACCAACAGAAAACAATACAACTGGACCCGAGAGTTCAACAATATCCAATGATATTGATGCTGCTGGGGTGAAGTCTGAGTGTGATGAAGTTTGTGAAA CCAGTGGCAGTAGTAAATCAGAGGTTGCTTTACTGGACTTATATTCTGGCTGTGGAGCAATGTCTACTGGTCTTTGCCTTGGTTTAAATCTGAAATGGGC TGTTGACTTGAATATAAACGCTTGTCAAAGTTTGAGGTTGAATCATCCGGAGACACAGAACAACATTGCATACTGTCTTCTAACAGAGGATGGAGAGCCA TCAACTTTCCGTGAGGCTATTAAAAGCACAGATGTATCTATGTGGATAACAACAATGCAAGACCCGGTCAGGGGACAGGGCAGGGTGGACGGGCGCCAGC TGGCGGCTTGTTCCTCTGTTTTTTCATCCGTGGTAGGCCACCGGTCAATATTCAAGCAAGTGGGGTATTTGGGTCGGCGTCTTTTTGAGTTTTCGGAGAG AGAGGGAGAGGAGAAACGTTCTCTCGTGAAAAATGATGACCCAGAAAAGAAACAATACTGTTTTGTTATGGATGATGAAGATGACAGTGATGATAATGAC GACCACGAAGATGTTTCTAAAGTGGAGAAAATATTGGAGATCTGCTACGGTGACCCCAAGAAGAATTATGGACCTGATTATGATACTTGGGAACCAATTA GTGGTTTGATAAATTGTCGGGAAGCTATAAAGAACTTTGTCATGCATGGCTACCTGTCAAACATTCTACCATTACCCGGTGATGTTGATGTAATTTGTGG TGGACCTCCATGTCAAGGAATCAGTGGCTTCAATCGTTTCAGGAATACTAAAAGTCCTTTAGATGATCCAAAAAACAAACAACTCATTGTTTTTATGGAT ACAGTGGATTTTCTGAGGCCAAAGTTTGTGTTGATTGAGAATGTTGTTGATCTCTTGAAGTTTGCCGATGGATTTATAGGACGATATGCCATGGGATGCC TTACTAATATGAAATACCAAGCTCGATTGGGTATGCTGGGGCATACGGTCTTCCGCAGTTTCGTATGCGGGTTTTTCTATGGGGTGCTTGCGCAACTGAG AAGCCACCACAATATCCTCTCCCCACTCATGATGTGCTTGGGAGAGGTATCGCACCTGTAG
AA sequence Show only first row Show all	>Potri.003G215800.5 pacid=42786144 polypeptide=Potri.003G215800.5.p locus=Potri.003G215800 ID=Potri.003G215800.5.v4.1 annot-version=v4.1 MPRKRQRSTTTKPEAAASTSSSTKQKKTAAKPKRTWLRKVEKEEEEEEEVFVLEGDEDDTNSVDEVGARMGTGSADSRPDTKEKRGSGKAEKKISTPVKV KEDETPARFVGAQIPGAEARKKWPHRYANKFRRTIWLDVDFSFMMMVFLSLLLFKSLTKYSVSDDSEEIVKARCHYTRAEVDRIIYDLYYDAHVQASDGE PDYICRISEMFESVDRTLYFTTQWYYRSTVTIIKDKYISDPKCVFFSEIRNDNPLECLTWKLNIVRLALNVDPENRRARSSGCDFYCDMLYLLPYSTFVR LPTENNTTGPESSTISNDIDAAGVKSECDEVCETSGSSKSEVALLDLYSGCGAMSTGLCLGLNLKWAVDLNINACQSLRLNHPETQNNIAYCLLTEDGEP STFREAIKSTDVSMWITTMQDPVRGQGRVDGRQLAACSSVFSSVVGHRSIFKQVGYLGRRLFEFSEREGEEKRSLVKNDDPEKKQYCFVMDDEDDSDDND DHEDVSKVEKILEICYGDPKKNYGPDYDTWEPISGLINCREAIKNFVMHGYLSNILPLPGDVDVICGGPPCQGISGFNRFRNTKSPLDDPKNKQLIVFMD TVDFLRPKFVLIENVVDLLKFADGFIGRYAMGCLTNMKYQARLGMLGHTVFRSFVCGFFYGVLAQLRSHHNILSPLMMCLGEVSHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69770		CMT3	chromomethylase 3 (.1)		Potri.003G215800 [exp]	0	1	CMT3.2
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Potri.014G094200 [exp]	1.41	0.8652
AT1G53163			unknown protein		Potri.001G398000 [exp]	3.46	0.8590
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Potri.010G235801 [exp]	6.63	0.8435
AT1G76740			unknown protein		Potri.005G194350 [exp]	11.31	0.7587
					Potri.008G043250 [exp]	16.24	0.8167
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.011G157000 [exp]	16.49	0.8283
AT5G63520			unknown protein		Potri.015G098700 [exp]	16.61	0.7933
AT3G56680			Single-stranded nucleic acid b...		Potri.010G237500 [exp]	18.84	0.8325
AT2G21300			ATP binding microtubule motor ...		Potri.009G124500 [exp]	24.89	0.7179
AT2G46550			unknown protein		Potri.002G173200 [exp]	25.37	0.7715

Compare expression of checked genes

Potri.003G215800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.