Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07610 102 / 1e-23 F-box family protein (.1) AT3G10240 42 / 0.0005 F-box and associated interaction domains-containing protein (.1) AT1G47790 42 / 0.0006 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132800 [exp] 455 / 4e-159 AT5G07610 158 / 1e-43 F-box family protein (.1) Potri.006G071100 [exp] 334 / 2e-112 AT5G07610 52 / 4e-07 F-box family protein (.1) Potri.010G254000 [exp] 127 / 8e-33 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.013G067800 [exp] 122 / 8e-31 AT5G07610 131 / 4e-34 F-box family protein (.1) Potri.013G065500 [exp] 109 / 2e-26 AT5G07610 155 / 6e-43 F-box family protein (.1) Potri.005G043500 [exp] 97 / 5e-22 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.004G232700 [exp] 84 / 1e-18 AT5G07610 117 / 3e-31 F-box family protein (.1) Potri.015G028500 [exp] 59 / 4e-09 AT5G49610 78 / 1e-15 F-box family protein (.1) Potri.007G027300 [exp] 49 / 3e-06 AT5G49610 80 / 2e-16 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042989 [exp] 85 / 3e-19 AT5G07610 82 / 9e-19 F-box family protein (.1) Lus10015048 [exp] 64 / 7e-11 AT5G07610 74 / 3e-14 F-box family protein (.1) Lus10017086 [exp] 58 / 4e-09 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10037802 [exp] 57 / 1e-08 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10014320 [exp] 50 / 2e-06 AT5G07610 74 / 2e-14 F-box family protein (.1) Lus10013872 [exp] 45 / 9e-05 AT3G06240 101 / 2e-23 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.003G215900.1 pacid=42784762 polypeptide=Potri.003G215900.1.p locus=Potri.003G215900 ID=Potri.003G215900.1.v4.1 annot-version=v4.1 ATGACCTTGCCAACGCAGAAGCATTTCTCATCTGTTGATGCTGTGTTTGGCAATGATGACCTTGTCACTGAGATTCTACTGCGTGTGCCTGCAAAAGCAG TCCTGAAACTCAAGTTAGTTTCCAAGAAATGGCTTTCTATCATCTCCCCCACGAGTTTTGCTATCCTCCATACCCGCCGCAATCCCCATACCGTCTCTGC TCTTCTTCTCAATTTTTCCTCATTTTTCGAGGAACCATCTAAGCACAAATATGTTTCTCTTGATGGGAAATCATTAGTCTACTTGTCCTATGATTTTCTT GATTTTGACCCCAACAACCTAGGGTGTTTTAGTACATATGTTTCTCAGTCCTGTAATGGCTTGCTTCTGTGTCCTAAATGGAGATGGTGTTCAACAGAGA GGTCTAAACCAACAGATTATATATTCAATCCTACCACAAGACAATTCGCATTGCTGCCACTACCACCTAACGATGGAAAATATTTTACTCGGATTCAGTT GGTGTTTGATCCTTTGGAATCGCCTCGTTATCGGGTTGTTTGCATTCAGTTCTTTAATTCAGAGCTTAAAATTTATGTGTACTCATCCGAGACCAAGGAT TGGAAGCTTTCTGTGAAGCTAGAAAATTTTGATCTTTTATCTGTCAACTTTACTGATGGTGTCTCTTGGAATGGTGCTGTTCATTGGATGAGTCCTATGG GGAATGGTTTAAGTTTCTTGCTTGATATGGAATGCCTTCAGACAATTCCAAGGCCTCCACTTCCTGAGAATTGGCAGGATAAAAATTTCAGGTACTTTGG GGAGTCTGGCGGGCAATTGCATTTTATTGGGATTCTAGCAGGAAACCAAAATCCTGATGATTTGAACTTGGGTATTGTCTCCCCTGATATGTCTCATGAC CAAAGTACTGATCAATCCATTGTAGTTTATTCCATGGAGAGAGGCTGCTCAAAATGGTTTGCTAAGTACTGTCTCCATATGAATGCCATTGTAATGGCAT ACCCTGAGATAACAGAAGATAAAGATCCTACAACCTCACCATTTTCGGCCGAGAAATGGTTTGATTTACTGTCGTTTATCGAGGGGAACGATGAAGAAGG GGCATTGCTGGTGATGAGAATCTCTGGTGAGATCATATCTTACAGCTTCAAGAACAACATATTGAAGAAGATTTTGAGTTTTCCTCTTAAGCATGCTACC TGCTATGCTTTCAACTACACTGAGACATTATCTTGTGTTTAA
AA sequence Show only first row Show all	>Potri.003G215900.1 pacid=42784762 polypeptide=Potri.003G215900.1.p locus=Potri.003G215900 ID=Potri.003G215900.1.v4.1 annot-version=v4.1 MTLPTQKHFSSVDAVFGNDDLVTEILLRVPAKAVLKLKLVSKKWLSIISPTSFAILHTRRNPHTVSALLLNFSSFFEEPSKHKYVSLDGKSLVYLSYDFL DFDPNNLGCFSTYVSQSCNGLLLCPKWRWCSTERSKPTDYIFNPTTRQFALLPLPPNDGKYFTRIQLVFDPLESPRYRVVCIQFFNSELKIYVYSSETKD WKLSVKLENFDLLSVNFTDGVSWNGAVHWMSPMGNGLSFLLDMECLQTIPRPPLPENWQDKNFRYFGESGGQLHFIGILAGNQNPDDLNLGIVSPDMSHD QSTDQSIVVYSMERGCSKWFAKYCLHMNAIVMAYPEITEDKDPTTSPFSAEKWFDLLSFIEGNDEEGALLVMRISGEIISYSFKNNILKKILSFPLKHAT CYAFNYTETLSCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07610			F-box family protein (.1)		Potri.003G215900 [exp]	0	1
AT3G56930			DHHC-type zinc finger family p...		Potri.006G027400 [exp]	2.00	0.9026
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Potri.010G197700 [exp]	4.24	0.9034
AT1G20670			DNA-binding bromodomain-contai...		Potri.016G141400 [exp]	7.41	0.8867
AT1G79620			Leucine-rich repeat protein ki...		Potri.006G114400 [exp]	9.00	0.8911
AT5G54370			Late embryogenesis abundant (L...		Potri.001G405650 [exp]	12.60	0.9017
AT4G02630			Protein kinase superfamily pro...		Potri.005G139500 [exp]	12.64	0.8922
AT3G50590			Transducin/WD40 repeat-like su...		Potri.005G136300 [exp]	17.77	0.8976
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138401 [exp]	17.88	0.8966
AT1G79670		WAKL22, RFO1	RESISTANCE TO FUSARIUM OXYSPOR...		Potri.001G040000 [exp]	23.36	0.8626
AT1G14540			Peroxidase superfamily protein...		Potri.008G022264 [exp]	23.68	0.8750

Compare expression of checked genes

Potri.003G215900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.