Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55230 383 / 2e-134 Family of unknown function (DUF716) (.1) AT1G55240 365 / 3e-127 Family of unknown function (DUF716) (.1) AT5G19870 317 / 8e-109 Family of unknown function (DUF716) (.1) AT1G49470 175 / 7e-53 Family of unknown function (DUF716) (.1) AT1G32120 139 / 1e-36 unknown protein AT1G55220 67 / 4e-13 unknown protein AT3G01360 61 / 2e-10 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) AT5G13890 42 / 0.0004 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009000 [exp] 524 / 0 AT1G55230 364 / 7e-127 Family of unknown function (DUF716) (.1) Potri.003G216600 [exp] 434 / 3e-154 AT1G55230 419 / 9e-149 Family of unknown function (DUF716) (.1) Potri.001G008900 [exp] 405 / 9e-143 AT1G55230 345 / 3e-119 Family of unknown function (DUF716) (.1) Potri.009G108900 [exp] 182 / 2e-55 AT1G49470 308 / 5e-105 Family of unknown function (DUF716) (.1) Potri.003G100700 [exp] 139 / 2e-39 AT1G32120 382 / 2e-124 unknown protein Potri.001G132800 [exp] 137 / 1e-38 AT1G32120 377 / 2e-122 unknown protein Potri.005G122800 [exp] 65 / 1e-11 AT3G01360 240 / 1e-77 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Potri.010G067000 [exp] 44 / 7e-05 AT5G13890 50 / 9e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039191 [exp] 372 / 1e-129 AT1G55230 391 / 1e-137 Family of unknown function (DUF716) (.1) Lus10013749 [exp] 371 / 2e-129 AT1G55230 386 / 1e-135 Family of unknown function (DUF716) (.1) Lus10023842 [exp] 166 / 2e-49 AT1G49470 275 / 6e-92 Family of unknown function (DUF716) (.1) Lus10021008 [exp] 152 / 4e-44 AT1G49470 257 / 2e-85 Family of unknown function (DUF716) (.1) Lus10014806 [exp] 148 / 1e-42 AT1G32120 424 / 1e-140 unknown protein Lus10038547 [exp] 144 / 3e-41 AT1G32120 429 / 3e-142 unknown protein Lus10028821 [exp] 52 / 2e-07 AT3G01360 289 / 5e-97 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Lus10017462 [exp] 46 / 2e-05 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10011779 [exp] 45 / 4e-05 AT1G32120 69 / 9e-13 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [poplar] [flax] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Potri.003G216500.1 pacid=42786687 polypeptide=Potri.003G216500.1.p locus=Potri.003G216500 ID=Potri.003G216500.1.v4.1 annot-version=v4.1 ATGGGCAGTTTTATAGGGCATGTCTTACCAGGCATGGCTTTCTTTATACTAGGTTTATGGCATCTCTTTAACCACATCAAACTTTATTCTCTACGACCAA ACTCTTACATTTCCTCTCCATGGTTCCCCACCACAAAACTAAGGTATTTGGAGCTCTATCTGATCATGTTAGGGAGCTCCATTTCCATATCAATGGAGCT CTTCATCGGGCCAGAAAAACATCATCCATTTGATGTTGATGGGACTATACCATCAAACCATCTCCGAAACTTTGAACACTCCTTAATATCAATGTCTTTC TTCGTCTATGCAACGTTTGCTATACTTCTTGATAAAATTAGTTCTGAAGCTCAACGTGGTCTAACACACATTTTAGGAGCATTAGCCTTTGGCCAACAGC TCCTCATGTTCCACCTCCACTCAACTGACCACAAAGGTCTTGAAGGCCAATACCATCTACTTCTACAAAATGTTGTAGTCATTTCCTTGGCCACCGCTCT TATGGGAATTGGCCTCCCTAAGAGTTTCTTGGTTAGCTTTGTTAGGTCTCTTTGTATATTGTTCCAAGGTGTATGGTTCGTAGTCATGGGGTTTATGTTA TGGACCCCAGGGTTGATTCCTAAGGGCTGCTCACTTTACAATGATGATGGTCACAAAATAGTAAGATGCACTAGCGAAGAGGCCTTGCATCGTGCCAAAT CATTAGTGAATATTCAATTTGGTTGGTTTGTCATCGGAATCACCATTTTCGCTATAACCTTGTATTTGGCCATGGTTGAAACATATAGCAAGAATGTCAA GTACTCATCATTGGCAAAGGAATTTGAAGAGATACATGAAGAGACTAGCGACATTGAATCTCTGAAGAAAAACAAATTAGAGGGCTCGAAGAGTTTGCTT GTGGAAAGAGGGTTTGCCCCTTTTGACATGGAAAGGTAG
AA sequence Show only first row Show all	>Potri.003G216500.1 pacid=42786687 polypeptide=Potri.003G216500.1.p locus=Potri.003G216500 ID=Potri.003G216500.1.v4.1 annot-version=v4.1 MGSFIGHVLPGMAFFILGLWHLFNHIKLYSLRPNSYISSPWFPTTKLRYLELYLIMLGSSISISMELFIGPEKHHPFDVDGTIPSNHLRNFEHSLISMSF FVYATFAILLDKISSEAQRGLTHILGALAFGQQLLMFHLHSTDHKGLEGQYHLLLQNVVVISLATALMGIGLPKSFLVSFVRSLCILFQGVWFVVMGFML WTPGLIPKGCSLYNDDGHKIVRCTSEEALHRAKSLVNIQFGWFVIGITIFAITLYLAMVETYSKNVKYSSLAKEFEEIHEETSDIESLKKNKLEGSKSLL VERGFAPFDMER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55230			Family of unknown function (DU...		Potri.003G216500 [exp]	0	1
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182321 [exp]	2.00	0.9030
AT2G23210			UDP-Glycosyltransferase superf...		Potri.009G095550 [exp]	3.87	0.8889
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.010G204600 [exp]	3.87	0.8983
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182000 [exp]	4.00	0.8976
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.011G168900 [exp]	7.93	0.8588
					Potri.005G163950 [exp]	8.00	0.8371
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.009G133600 [exp]	10.58	0.8415
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.009G064800 [exp]	11.40	0.8485
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Potri.009G127900 [exp]	12.64	0.8554
AT1G52700			alpha/beta-Hydrolases superfam...		Potri.003G060300 [exp]	12.96	0.7256

Compare expression of checked genes

Potri.003G216500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.