Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55230 420 / 8e-149 Family of unknown function (DUF716) (.1) AT1G55240 395 / 4e-139 Family of unknown function (DUF716) (.1) AT5G19870 347 / 2e-120 Family of unknown function (DUF716) (.1) AT1G49470 170 / 1e-50 Family of unknown function (DUF716) (.1) AT1G32120 135 / 3e-35 unknown protein AT3G01360 62 / 1e-10 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) AT1G55220 58 / 4e-10 unknown protein AT5G13890 42 / 0.0002 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G008900 [exp] 523 / 0 AT1G55230 345 / 3e-119 Family of unknown function (DUF716) (.1) Potri.003G216500 [exp] 445 / 1e-158 AT1G55230 383 / 3e-134 Family of unknown function (DUF716) (.1) Potri.001G009000 [exp] 441 / 6e-157 AT1G55230 364 / 7e-127 Family of unknown function (DUF716) (.1) Potri.009G108900 [exp] 176 / 2e-53 AT1G49470 308 / 5e-105 Family of unknown function (DUF716) (.1) Potri.003G100700 [exp] 134 / 4e-37 AT1G32120 382 / 2e-124 unknown protein Potri.001G132800 [exp] 127 / 9e-35 AT1G32120 377 / 2e-122 unknown protein Potri.005G122800 [exp] 67 / 2e-12 AT3G01360 240 / 1e-77 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Potri.010G067000 [exp] 61 / 1e-10 AT5G13890 50 / 9e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.008G170900 [exp] 49 / 2e-06 AT5G13890 50 / 7e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013749 [exp] 426 / 5e-151 AT1G55230 386 / 1e-135 Family of unknown function (DUF716) (.1) Lus10039191 [exp] 419 / 2e-148 AT1G55230 391 / 1e-137 Family of unknown function (DUF716) (.1) Lus10023842 [exp] 176 / 3e-53 AT1G49470 275 / 6e-92 Family of unknown function (DUF716) (.1) Lus10021008 [exp] 164 / 1e-48 AT1G49470 257 / 2e-85 Family of unknown function (DUF716) (.1) Lus10038547 [exp] 138 / 9e-39 AT1G32120 429 / 3e-142 unknown protein Lus10014806 [exp] 136 / 4e-38 AT1G32120 424 / 1e-140 unknown protein Lus10028821 [exp] 62 / 8e-11 AT3G01360 289 / 5e-97 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Lus10011779 [exp] 59 / 1e-09 AT1G32120 69 / 9e-13 unknown protein Lus10017462 [exp] 58 / 3e-09 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10041505 [exp] 47 / 1e-05 AT5G13890 335 / 2e-115 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [poplar] [flax] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Potri.003G216600.1 pacid=42786734 polypeptide=Potri.003G216600.1.p locus=Potri.003G216600 ID=Potri.003G216600.1.v4.1 annot-version=v4.1 ATGGGTACTTTAGTGGGTCATGTGGCTCCGGGCTTTGCCTTCCTTGCTCTTGGTTTATGGCACCTCTTTAGCCATATCAAACTCCATGCTCAACAACCAA ACTCCTACACATCCTCTCCATGGTTCCCTACTTCAAGATTAAGGTACTTGGAGCTCTTTCTCATAATGTTAGGCAGCTCTATTTCTGTATCCATGGAGCT CTTTATTGGTCCTAGAAATCACCAACCATTTGATACTGATGGAACCATACCATCAAACCACCTTCACAACTTTGAGCACTCCTCGATATCAATTACTTTC TTCGTTTATGCGGCCTTTGCTATTCTTCTTGATAGAATTGGGCCTAAAGCACAGTATGGTCTAACACAGTTTCTTGGCGCATTAGCCTTTGGTCAACAAC TTTTCCTCTTCCACCTTCACTCAGCAGATCACATGGGAGTTGAAGGCCAGTACCACTTGCTTCTACAAATTGTCATAGTTGTTTCTCTAGCCACCGCTCT CATGGGGATCGGTCTCCCGAAAAGTTTCATGGTTAGCTTTGTTAGGTCAGCTAGTATTACGTTCCAAGGAGTTTGGTTCATAGTCATGGGCTATGCATTA TGGACCCCTTCATTGATTCCTAAAGGTTGCTTCCTTAACTTAGAAGAAGGACATCAAGTGGTTAGATGCCATGGTGAAGAGGCTTTGCATCGTGCTAAAT CACTCGTTAATATTCAATTTAGCTGGTTGTTGATTGCGATCATTATTTTTGTGATGTCCTTTTATTTGTTCTTGGTCAAGTTATATGGTGACGAGGCTGA GTACTCAACATTGACAAAGGAAAACTTGCTGTATGAAGAAGACTCGGATGATGTTGAATCACAAAAGGGTAGCAAAGTTGGTGAAAAGAAGAGCTTTATG GAAATTGGAAGAGGCTTTGTACCAATAGACATGGAAAGGTAA
AA sequence Show only first row Show all	>Potri.003G216600.1 pacid=42786734 polypeptide=Potri.003G216600.1.p locus=Potri.003G216600 ID=Potri.003G216600.1.v4.1 annot-version=v4.1 MGTLVGHVAPGFAFLALGLWHLFSHIKLHAQQPNSYTSSPWFPTSRLRYLELFLIMLGSSISVSMELFIGPRNHQPFDTDGTIPSNHLHNFEHSSISITF FVYAAFAILLDRIGPKAQYGLTQFLGALAFGQQLFLFHLHSADHMGVEGQYHLLLQIVIVVSLATALMGIGLPKSFMVSFVRSASITFQGVWFIVMGYAL WTPSLIPKGCFLNLEEGHQVVRCHGEEALHRAKSLVNIQFSWLLIAIIIFVMSFYLFLVKLYGDEAEYSTLTKENLLYEEDSDDVESQKGSKVGEKKSFM EIGRGFVPIDMER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55230			Family of unknown function (DU...		Potri.003G216600 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.003G098900 [exp]	8.48	0.8863
AT4G27740			Yippee family putative zinc-bi...		Potri.012G019200 [exp]	22.97	0.8858
AT2G31945			unknown protein		Potri.001G230900 [exp]	28.77	0.8344
AT5G06740			Concanavalin A-like lectin pro...		Potri.006G193000 [exp]	32.32	0.8768
AT5G42610			Protein of unknown function (D...		Potri.014G041000 [exp]	33.16	0.8326
AT2G32210			unknown protein		Potri.001G439800 [exp]	48.00	0.8819
AT1G24140			Matrixin family protein (.1)		Potri.012G104600 [exp]	59.76	0.8751	Pt-MMP.14
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Potri.005G052800 [exp]	69.84	0.8752	ACCAL.4
AT1G31130			unknown protein		Potri.002G074200 [exp]	78.48	0.8658
AT1G55230			Family of unknown function (DU...		Potri.001G008900 [exp]	79.59	0.8711

Compare expression of checked genes

Potri.003G216600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.