Plant FIBer expression Database

Potri.003G216651 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G55250 281 / 1e-91 HUB2, HISTONEMONO-UBIQUITINATION2 histone mono-ubiquitination 2 (.1.2.3.4)
AT2G44950 164 / 5e-44 RDO4, HUB1 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G008800
[exp]
412 / 1e-136 AT1G55250 993 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4)
Potri.002G141300
[exp]
189 / 9e-53 AT2G44950 877 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1)
Potri.014G055800
[exp]
182 / 1e-50 AT2G44950 917 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041689
[exp]
341 / 3e-109 AT1G55250 976 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4)
Lus10024057
[exp]
334 / 9e-107 AT1G55250 911 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4)
Lus10042890
[exp]
177 / 1e-48 AT2G44950 885 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1)
Lus10028187
[exp]
132 / 4e-33 AT2G44950 731 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1)
PFAM info
Representative CDS sequence
>Potri.003G216651.1 pacid=42787365 polypeptide=Potri.003G216651.1.p locus=Potri.003G216651 ID=Potri.003G216651.1.v4.1 annot-version=v4.1
ATGGTTGAACTTGAAGAAAGTAGAAGAAAACTAGTCAATTTGAAAATGCAAAGGGATGCTGCAGTTGGGATGCATACTCCGGCTCCAAGTGCAGTAAATG
GAAACTTGTCACCTGAAAAGACTACAGATAGGTCGAAGCGTTTTTGGGAATTGAGGGATTCCCTTGACGAGATGAAGATTCTGGCAGCTGACCGTCTTTC
TGAGCTTGAAAATCAGACCTTATCAAAAGAATTGGAAGATCTTGAGGATGAACTCAAGGATGACAAACATATACATTCATCTCATCTCTACAGTTTAGTA
AAGGATCAGCTCCAGCATTGGAATGATGAAGTGGAAAGATACAAAACGCTGACAGATTCTTTGCAGGTTATTTACCTTGGATTTTTTTTTCCTGTTTCTT
TTTACACATGCCTGATCTTAAATGTTCTTGAAATAAAAGAATCTGAATGTAGGGCTCATTCCCAAGCTGAAGTTCTGAAAAGTTCATTGGATGAACACAG
TCTAGAGTTGAGAGTCAAAGCTGCTATTGGGGCTGAGGCTGCTTGCCATCAAAGGCTTTCTGCTACTGAAGCTGAAATAGCTGAATTAAGAGCTAAACTG
GATGCTTCTGAACGAGATGTTTTTGAGCTTAAAGAAGCCATCAAAAGTAAAGATAAGGAGGCTGAGAGCATTGGCCAAGCATATGAAGATATGCAGACAC
AAAACCAACACTTATTGCAGCAAGTCGGTGAGAGGGATGACTACAATATCAAGCAAAGCTTTCTGCTGTCCGAGAAGCAAGCACTGGCAAAGCACCTTCA
ACAAGTTAATGCATCAGTGGAATCATTAAAATCGAGGATTGCTCACAGTGAAGAGCAGATGAAACATTATGTGATTGAGGCAGTTAGATCCACTAAAGAA
GACAGACATGTTGCAATCAATCTTGAAAGTGCACTGTTGGAATTAATGGATGCTGAGAAGGAGTTGAAGTGGCTTAAATATGCTATCCAGAAGAAGATAG
ATGAAATCCAAACAGAACTGGTCAGTGAAAGGAGTGAAAGGAAAATGCTCGAGGAAGAGCTCATGGAGTTGAACAATAGAGTTGCTGAGTTGACTTCTGA
AACTGGCGAGGCTGCAATACAGCGACTCCAAGATGAGATAAAAGATTGCAAAAGTATGCTCAAGTGTAGTGTGTGTTCGGACCGGCCTAAGGAGGTTGTG
ATTGTTAAATGCTATCATCTATTCTGCAATCCATGA
AA sequence
>Potri.003G216651.1 pacid=42787365 polypeptide=Potri.003G216651.1.p locus=Potri.003G216651 ID=Potri.003G216651.1.v4.1 annot-version=v4.1
MVELEESRRKLVNLKMQRDAAVGMHTPAPSAVNGNLSPEKTTDRSKRFWELRDSLDEMKILAADRLSELENQTLSKELEDLEDELKDDKHIHSSHLYSLV
KDQLQHWNDEVERYKTLTDSLQVIYLGFFFPVSFYTCLILNVLEIKESECRAHSQAEVLKSSLDEHSLELRVKAAIGAEAACHQRLSATEAEIAELRAKL
DASERDVFELKEAIKSKDKEAESIGQAYEDMQTQNQHLLQQVGERDDYNIKQSFLLSEKQALAKHLQQVNASVESLKSRIAHSEEQMKHYVIEAVRSTKE
DRHVAINLESALLELMDAEKELKWLKYAIQKKIDEIQTELVSERSERKMLEEELMELNNRVAELTSETGEAAIQRLQDEIKDCKSMLKCSVCSDRPKEVV
IVKCYHLFCNP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G55250 HUB2, HISTONEMO... histone mono-ubiquitination 2 ... Potri.003G216651
[exp]
0 1
AT4G10780 LRR and NB-ARC domains-contain... Potri.017G035300
[exp]
2.82 0.9321
AT1G49180 protein kinase family protein ... Potri.019G011600
[exp]
3.87 0.9050
AT1G27170 transmembrane receptors;ATP bi... Potri.011G012801
[exp]
4.89 0.9217
AT4G04880 adenosine/AMP deaminase family... Potri.011G000100
[exp]
5.91 0.8904
AT4G20350 oxidoreductases (.1.2) Potri.013G161600
[exp]
7.41 0.8828
AT3G59580 NLP9 Plant regulator RWP-RK family ... Potri.017G020398
[exp]
14.28 0.9043
AT1G45616 AtRLP6 receptor like protein 6 (.1) Potri.012G024900
[exp]
16.43 0.8841
AT4G25550 Cleavage/polyadenylation speci... Potri.012G140301
[exp]
16.52 0.9016
AT2G44970 alpha/beta-Hydrolases superfam... Potri.018G085600
[exp]
18.13 0.8867
AT1G03670 ankyrin repeat family protein ... Potri.013G133800
[exp]
20.00 0.9094

Potri.003G216651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.