Plant FIBer expression Database

Potri.003G216700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G32930 300 / 2e-103 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013750
[exp]
283 / 3e-96 AT3G32930 302 / 4e-104 unknown protein
Lus10039189
[exp]
270 / 1e-91 AT3G32930 299 / 2e-103 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G216700.1 pacid=42787083 polypeptide=Potri.003G216700.1.p locus=Potri.003G216700 ID=Potri.003G216700.1.v4.1 annot-version=v4.1
ATGCTACTCTCACTTGTCCAAACAATTTACACATCACCTTTTCAATCCAAAACACTAACCCGCTTCAACAGTGTCATAAAGTCCACAACTTTGTTGCCAA
AATCACTCTTTCCCACCTTTGACTGCCCATCAAAAACCTTCTCAAGACTGTTTTTTAATGGCAATACAAGAGATAGAAAGTTGACAGCTGGTGCTAGCTT
TACTGTCCATGCTTCTTTGATTGAGGCTCCAGTTTTATGGGTTGGTAGGCTTTGTATCTTTTATGCACTGTTAAAGGCTGGTTTAGCTGGATCAGAGGCT
AACCCACTTGTTTCTGGTTTGGATGGTGGTGGTGTTGGTGGTGGTGCTGAATCTGGTGACCTGGGGTTTTCTAAGTGGATTGAGGCCATACAAGGCAAAC
CAGATAAAGAAGCAGCTGACAAAAGGAAATTGGTAAGCAAATGGCATCCCACAACTAAGGGTACACTCAGAAGGAACTATAGGGTGCCTTCCAAATCCGA
AGGGCAGCGGCGCCTTAAAGCAATTGCAGCTTTGCTATCCGAAGATGATTACTTTGTAGATGCAACTTCTCACAAGGGCTGTCAAATTAGGAGGGAGAGT
GCTCATGGTGAGAGTGTGTGCTGCAACAATGTTAGGGCTCTCTTTGATGAACTCCCAACCCCACATTTGCTTGTGGAAATTACAGCTTTTCCTGCTGGGC
CTCTTACAGAGAAGGATTACGTCAAGGCCGAGAAATTAGAGAGGGTTCTCAGATCTGGTCCTTCCATTTGA
AA sequence
>Potri.003G216700.1 pacid=42787083 polypeptide=Potri.003G216700.1.p locus=Potri.003G216700 ID=Potri.003G216700.1.v4.1 annot-version=v4.1
MLLSLVQTIYTSPFQSKTLTRFNSVIKSTTLLPKSLFPTFDCPSKTFSRLFFNGNTRDRKLTAGASFTVHASLIEAPVLWVGRLCIFYALLKAGLAGSEA
NPLVSGLDGGGVGGGAESGDLGFSKWIEAIQGKPDKEAADKRKLVSKWHPTTKGTLRRNYRVPSKSEGQRRLKAIAALLSEDDYFVDATSHKGCQIRRES
AHGESVCCNNVRALFDELPTPHLLVEITAFPAGPLTEKDYVKAEKLERVLRSGPSI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G32930 unknown protein Potri.003G216700
[exp]
0 1
AT3G03710 PDE326, PNP, RI... resistant to inhibition with F... Potri.019G040100
[exp]
3.16 0.9436
AT5G59750 DHBP synthase RibB-like alpha/... Potri.001G234900
[exp]
7.87 0.9397
AT1G69523 S-adenosyl-L-methionine-depend... Potri.008G088500
[exp]
10.00 0.9319
AT5G37360 unknown protein Potri.019G023700
[exp]
10.58 0.9233
AT4G28080 Tetratricopeptide repeat (TPR)... Potri.006G180100
[exp]
11.48 0.9397
AT1G03670 ankyrin repeat family protein ... Potri.018G077766
[exp]
15.32 0.9305
AT4G04350 EMB2369 EMBRYO DEFECTIVE 2369, tRNA sy... Potri.011G009600
[exp]
17.74 0.9279
AT4G28080 Tetratricopeptide repeat (TPR)... Potri.018G102500
[exp]
21.02 0.9195
AT2G46870 B3 NGA1 NGATHA1, AP2/B3-like transcrip... Potri.002G181600
[exp]
28.33 0.8925
Potri.011G080900
[exp]
30.39 0.9281

Potri.003G216700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.