Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G32940 249 / 7e-73 RNA-binding KH domain-containing protein (.1) AT5G51300 100 / 1e-21 splicing factor-related (.1.2.3) AT1G09660 46 / 6e-05 RNA-binding KH domain-containing protein (.1.2) AT4G26480 45 / 0.0001 RNA-binding KH domain-containing protein (.1) AT2G38610 44 / 0.0003 RNA-binding KH domain-containing protein (.1.2) AT3G08620 43 / 0.0005 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G008700 [exp] 952 / 0 AT3G32940 236 / 4e-68 RNA-binding KH domain-containing protein (.1) Potri.001G126400 [exp] 105 / 4e-23 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.003G107200 [exp] 102 / 3e-22 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.003G005500 [exp] 48 / 2e-05 AT1G09660 335 / 8e-116 RNA-binding KH domain-containing protein (.1.2) Potri.004G225900 [exp] 45 / 8e-05 AT1G09660 334 / 2e-115 RNA-binding KH domain-containing protein (.1.2) Potri.013G159800 [exp] 42 / 0.0009 AT2G38610 408 / 7e-145 RNA-binding KH domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039188 [exp] 364 / 2e-114 AT3G32940 255 / 2e-75 RNA-binding KH domain-containing protein (.1) Lus10013751 [exp] 344 / 7e-107 AT3G32940 240 / 8e-70 RNA-binding KH domain-containing protein (.1) Lus10038932 [exp] 103 / 3e-22 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3) Lus10037344 [exp] 46 / 9e-05 AT1G09660 400 / 1e-141 RNA-binding KH domain-containing protein (.1.2) Lus10035768 [exp] 45 / 0.0001 AT1G09660 399 / 7e-141 RNA-binding KH domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G216800.1 pacid=42785968 polypeptide=Potri.003G216800.1.p locus=Potri.003G216800 ID=Potri.003G216800.1.v4.1 annot-version=v4.1 ATGACTGCAACAAGTGCTTCATCCAGTGCATCGACAACTAGCGGTCCAAAGGTTTCTTTATTTGCTGCCAAGTCAGGGTTTGTTATCCCAAAAAACAAAC TTTCAGGTTCATTGGTTCCTATCTTCAAAGGAGGTAAAAAACCAGGTAGTAATGATGCTGTGAATGGAGAAAGTACCAATCAGGTCCAGAGGAAAACGAA ATGGGGTCCTGATTTAACACAAGATGCTGATGTTAGAAGGGGGAGAGCCTTGGCTTACCAGACTCGAGTGGATCAAATTGTGCAACAGCTGAAATCAGAA ATTTCAGAACCTGGGGGAGATAGAGACTCACATGAACCCAATGAGCTTGAAGATCTCAAATCTTTAAGTCCACTAATCCACAATAAGAACTCTGAACTTT TGGAACTTGAAAAACAGGAAGCTATAGGTGAGATACTTAAGTTGAATCCAACCTACAAGGTACCACCTGACTATAAGCCTTTGCTAAAAGAGACCACAGT TCCTATCCCTGTCAAGGAATATCCTGGATATAATTTTATTGGTCTAATATTTGGGCATGGAAGCGAGACTCAGAGGCGATTAGAAAAGGAAACTGGAGCC AAAATACTAGTACATGGTACCACAGCACATACTGGAGAGAAGGTTGAAATTTCTTCATCTGATGGCACTGAAACCCAGGTTGTGTATGAAGAGTTGAGTG TTCTTGTAACAGCGGACACATTTGAGAAAGTTGATGCAGCTGTTGTCCTGATTGAATTGCTACTCGCCTCAGTATCAGGAAATTTAGCAGATAATGCAAA TGTTAGCCAAAACCAGGAGGCCTCTACTCCTTTCATGGTCTCTACCCTTGTAAACCAGGGAGTTTTTCCACCTGTAACTCCTCAACAAGGTCAGTTCCAA TATCAAAATTCATGGTTCCCTGCTGCCACACCTCAAGCTCATGTACACCAGCCTTCAGGCTTAATTTCCCCCCAGACTTCTTCAGCACCAATTTTAAACA ATCCTGTACATGTACAGTCATCATCTTTCAATTCTCCAACCATGCCTTCTTTATTTGGGCCTCGGCCAGTGCAGGCCTTTTCAAATCCATATCTACCTAG AAACTTTCCCATGCCAGCTCCACAGCCTCAATTTACTGGTAGCCTGCCCCAACCAATAGGGTCGTCCTCTGTTGCAAGGCCATTATTACTTCAACCCCTG TCAAGCGGTCCAACAGGACCACCACCTGACAGGCCATTAGGTCCTTCGGGGTTCTCTTCTGGGTGGCCTGGAGCTCCTTCAAGTGTTCCAGCATCTTTAG GTTTAGGCAACATGGGACAAACAACTCCTCCTATGGTTCCTCCACCTGGTCCTAGGCATGCTGTACCACAGCTAGGTTTTCCATCCCCTGCAGCACCTCC AAATGCAGCTTCTATGAACCGTCCTACCACAGCCCCAACTTTTACTTCTGTTCCACGACCTCAAGTGGGACCTTCCTCTGCTCCTACCCCAATCCAATCT TCACTTGGTACGCCATTGCCTAATTCATCAATAACTCCGGTATTTGGTTCTGCACCAATTTCATCACCTATGATGCCTGCATCACAGGCAACTCTGCAGA CAGGAGTTGTAGGAGCTTTTCCTGTAACTACCTCAAATTTTGCTCCCATAAGATCACCCACAATAACAAATGCAAAGGTGCAGCATTCAGGTACTGGTGA TTTTACTTTCCGACCTCATCACCAGCAGAATCCAGCTCCTCAAATTGTTCCCAGCTTTAGCAGTCATCACGCTACTCAGAATGGCCCCCTTCATAGACCC ATGATGCAAACAATAACACCTCAAGCACCACCTTTCCACATGGATGTCCCTAACTCAACCACTCAACCTGGCAGGCATCTGTTTCCTAGACCACAGGTTG GCAACCAATTGGGTCAAGTTCCCTTTGTTGGAAATCCTACCGGTCACTCGCATCACCCCAGACTTCCAGCATTTTCAAATGCAAGTCCAGTGGGACCACC GGTCATACAGATGGGATCCCGGAACTTTAGCTCAACTCCCCACCTACCCAATTTAACAGGTCCTTTACCTCCCAGACCAGGAAACCCCATGCAACTTCAG CAAAATTATCCAGCTCCAAGAGCTCCTCGAGGACAATCAATTGCTCTGAATCAGCAGCCTTTCATCTCCTCGGCATCTGCTAGACCAGCTTCATTCCAGG GAGGGCAGCAGGTTTATGATCCATTTTCTCCCACTTCTGTTTCAGCTGCGTCTCAACAGCAAGTAGGTAATCTAGGAAAGGGGAGAAAGCCAGAGAACGA TCCCGAGTATGAAGATTTGATGGCCTCGGTTGGAGTAAAATAA
AA sequence Show only first row Show all	>Potri.003G216800.1 pacid=42785968 polypeptide=Potri.003G216800.1.p locus=Potri.003G216800 ID=Potri.003G216800.1.v4.1 annot-version=v4.1 MTATSASSSASTTSGPKVSLFAAKSGFVIPKNKLSGSLVPIFKGGKKPGSNDAVNGESTNQVQRKTKWGPDLTQDADVRRGRALAYQTRVDQIVQQLKSE ISEPGGDRDSHEPNELEDLKSLSPLIHNKNSELLELEKQEAIGEILKLNPTYKVPPDYKPLLKETTVPIPVKEYPGYNFIGLIFGHGSETQRRLEKETGA KILVHGTTAHTGEKVEISSSDGTETQVVYEELSVLVTADTFEKVDAAVVLIELLLASVSGNLADNANVSQNQEASTPFMVSTLVNQGVFPPVTPQQGQFQ YQNSWFPAATPQAHVHQPSGLISPQTSSAPILNNPVHVQSSSFNSPTMPSLFGPRPVQAFSNPYLPRNFPMPAPQPQFTGSLPQPIGSSSVARPLLLQPL SSGPTGPPPDRPLGPSGFSSGWPGAPSSVPASLGLGNMGQTTPPMVPPPGPRHAVPQLGFPSPAAPPNAASMNRPTTAPTFTSVPRPQVGPSSAPTPIQS SLGTPLPNSSITPVFGSAPISSPMMPASQATLQTGVVGAFPVTTSNFAPIRSPTITNAKVQHSGTGDFTFRPHHQQNPAPQIVPSFSSHHATQNGPLHRP MMQTITPQAPPFHMDVPNSTTQPGRHLFPRPQVGNQLGQVPFVGNPTGHSHHPRLPAFSNASPVGPPVIQMGSRNFSSTPHLPNLTGPLPPRPGNPMQLQ QNYPAPRAPRGQSIALNQQPFISSASARPASFQGGQQVYDPFSPTSVSAASQQQVGNLGKGRKPENDPEYEDLMASVGVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G32940			RNA-binding KH domain-containi...		Potri.003G216800 [exp]	0	1
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.002G243350 [exp]	3.00	0.8298
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.007G086700 [exp]	3.60	0.8613
AT4G02740			F-box/RNI-like superfamily pro...		Potri.005G210500 [exp]	7.21	0.7727
AT3G19895			RING/U-box superfamily protein...		Potri.010G171100 [exp]	7.34	0.8493
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.005G094600 [exp]	14.49	0.8390
					Potri.017G152420 [exp]	26.07	0.8316
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Potri.015G017200 [exp]	26.55	0.8232
AT1G75230			DNA glycosylase superfamily pr...		Potri.005G227700 [exp]	26.83	0.8273
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Potri.012G093000 [exp]	28.56	0.8216
AT4G01290			unknown protein		Potri.002G163000 [exp]	28.77	0.8251

Compare expression of checked genes

Potri.003G216800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.