Plant FIBer expression Database

Potri.003G216900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11880 544 / 0 transferases, transferring hexosyl groups (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G008600
[exp]
84 / 3e-19 AT1G11880 66 / 1e-13 transferases, transferring hexosyl groups (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000535
[exp]
568 / 0 AT1G11880 568 / 0.0 transferases, transferring hexosyl groups (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF04188 Mannosyl_trans2 Mannosyltransferase (PIG-V)
Representative CDS sequence
>Potri.003G216900.1 pacid=42785624 polypeptide=Potri.003G216900.1.p locus=Potri.003G216900 ID=Potri.003G216900.1.v4.1 annot-version=v4.1
ATGTCAAAAACCTTAGAATCTCCACGAAATCACCAAACCCTAAAAATCATCAAATCAGCAATCACTTCAAGACTTCTCCTTTTATCACTAATCCTCCTCT
GGCGCACCCTCATTGATCCATACGACACGTCGTCCCCTCTGGACCCCAATTGCCTCTCCACAGACCATCAACAACAAGAACGACATGTCATTCAATTTCC
TCGAATTGGGTCTGCAATAGAGGACAGTATTGTTTGGGATAGTGTCTACTTTGTCAGAATTGCTCAATGTGGATATGAATATGAGCAAACTTATGCGTTT
TTGCCTTTGCTTCCTGCTTGCGTTGTCCTTTTGTCACGTACAGTTTTAGTGCCGCTGGTTTCAGTTATTGGGCACAGGGCTGTGCTTGCATTGGCGGGTT
ATTTGGTTAATAATGTTGCATTTGTGCTCGCGGCAGTTTATTTTTACAGGGTTTCAGTTATTATTTTGAAGGACCCTGAAGCAGCATTTCAAGCTTCAAT
TTTGTTTTGCTTCAATCCAGCTTCCATATTTTATTCATCAATATACACTGAGAGTTTATATGCCTTATTATCTCTGGGAGGGTTGTACTACTTAATATCT
GGTGCAAGTAATGTAGCTGTTCTTTGGTTTGCTCTCTCTGGCTGTGCAAGGTCAAATGGAGTGCTTAATGCTGGCTATCTCTGTTTTCAGACCATGCATC
AAGCTTATGATGCTGTATTCCTACAAAAACGTGCTCATTTGGCAGTGAAGGTTCTCATTGTTGGAGCACTGCGTTGCATATGTATTTTCATTCCCTTTAT
TGCGTATCAAGCATATGGCTACTACAATATCTGTCATGGGCATTCCTTGGATGAAATGAGGCCTTGGTGCAAAGCCAAAATACCTTTGCTGTACAGTTAT
ATCCAAAGTCACTATTGGGGAGTAGGTTTCTTGAGATATTTTCAGTTGAAGCAGTTGCCAAACTTTCTACTTGCATCTCCAATATTATCTCTGGCAGTTT
GCTCCGTTCTCCATTACGTGAGGTCACAACCTGAGATATTTTTCTCACTGGGTTTTCGAGCTTCTAATGGAGAGAAAAGGCCTACAGCTTCACCGTTGTC
TCTAGATAGAGTTCCAGAATCAAACAGCTCTCATTTGAAGGAGAAATCCTCTGCTAAAATGCAAGATAAATACACTGTTAGGCAGAGGAAGCAGAGGATC
AAAGGGGATAATTATGTACTCCTGGATGAATATGATTCATTAGAGAAGCCCAGATACTTGTCTACCTTTATTGTCCCATGCACTCTGCACCTGTTGTTCA
TGGCAGCCACAGCATTTTTTGTCATGCATGTACAGGTGTCCACTCGTTTCTTGTCAGCCAGTCCTCCTCTCTATTGGTTTGCATCACACTTACTGATATC
TCCTGGTACTGGTAAGAGATGGGGATACATGATCTGGACATATTCTACAGTCTACATCCTTCTTGGCAGTTTGCTCTTTTCAAACTTCTACCCTTTCACT
TGA
AA sequence
>Potri.003G216900.1 pacid=42785624 polypeptide=Potri.003G216900.1.p locus=Potri.003G216900 ID=Potri.003G216900.1.v4.1 annot-version=v4.1
MSKTLESPRNHQTLKIIKSAITSRLLLLSLILLWRTLIDPYDTSSPLDPNCLSTDHQQQERHVIQFPRIGSAIEDSIVWDSVYFVRIAQCGYEYEQTYAF
LPLLPACVVLLSRTVLVPLVSVIGHRAVLALAGYLVNNVAFVLAAVYFYRVSVIILKDPEAAFQASILFCFNPASIFYSSIYTESLYALLSLGGLYYLIS
GASNVAVLWFALSGCARSNGVLNAGYLCFQTMHQAYDAVFLQKRAHLAVKVLIVGALRCICIFIPFIAYQAYGYYNICHGHSLDEMRPWCKAKIPLLYSY
IQSHYWGVGFLRYFQLKQLPNFLLASPILSLAVCSVLHYVRSQPEIFFSLGFRASNGEKRPTASPLSLDRVPESNSSHLKEKSSAKMQDKYTVRQRKQRI
KGDNYVLLDEYDSLEKPRYLSTFIVPCTLHLLFMAATAFFVMHVQVSTRFLSASPPLYWFASHLLISPGTGKRWGYMIWTYSTVYILLGSLLFSNFYPFT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G11880 transferases, transferring hex... Potri.003G216900
[exp]
0 1
AT3G30841 Cofactor-independent phosphogl... Potri.004G106200
[exp]
1.41 0.6800
AT4G10970 unknown protein Potri.003G140700
[exp]
1.41 0.6696
AT4G00570 NAD-ME2 NAD-dependent malic enzyme 2 (... Potri.014G079900
[exp]
7.07 0.6319
AT3G17590 CHE1, BSH BUSHY GROWTH, transcription re... Potri.010G004100
[exp]
10.81 0.6061 Pt-BSH.1
AT5G54390 ATAHL, AHL HAL2-like (.1) Potri.011G124700
[exp]
12.24 0.6000
Potri.010G168900
[exp]
18.57 0.5786
AT5G26751 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RE... Potri.013G004700
[exp]
21.81 0.5797 MSK.4
AT2G26800 Aldolase superfamily protein (... Potri.006G036800
[exp]
24.00 0.5726
AT3G55490 GINS complex protein (.1) Potri.008G068100
[exp]
25.21 0.6507 TTN10.1
AT4G04320 malonyl-CoA decarboxylase fami... Potri.004G005500
[exp]
38.98 0.5566

Potri.003G216900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.